CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-020228
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 N-terminal Xaa-Pro-Lys N-methyltransferase 1 
Protein Synonyms/Alias
 Alpha N-terminal protein methyltransferase 1A; Methyltransferase-like protein 11A; N-terminal RCC1 methyltransferase; X-Pro-Lys N-terminal protein methyltransferase 1A; NTM1A; N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed 
Gene Name
 NTMT1 
Gene Synonyms/Alias
 C9orf32; METTL11A; NRMT; AD-003 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
10SEVIEDEKQFYSKAKubiquitination[1, 2]
17KQFYSKAKTYWKQIPubiquitination[2]
59FLREGPNKTGTSCALubiquitination[2, 3, 4, 5, 6]
109TYLGEEGKRVRNYFCubiquitination[2, 3]
Reference
 [1] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [2] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [3] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [4] Global identification of modular cullin-RING ligase substrates.
 Emanuele MJ, Elia AE, Xu Q, Thoma CR, Izhar L, Leng Y, Guo A, Chen YN, Rush J, Hsu PW, Yen HC, Elledge SJ.
 Cell. 2011 Oct 14;147(2):459-74. [PMID: 21963094]
 [5] Ubiquitin ligase substrate identification through quantitative proteomics at both the protein and peptide levels.
 Lee KA, Hammerle LP, Andrews PS, Stokes MP, Mustelin T, Silva JC, Black RA, Doedens JR.
 J Biol Chem. 2011 Dec 2;286(48):41530-8. [PMID: 21987572]
 [6] Integrated proteomic analysis of post-translational modifications by serial enrichment.
 Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA.
 Nat Methods. 2013 Jul;10(7):634-7. [PMID: 23749302
Functional Description
 Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]- Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di- methylation of Pro in the Pro-Pro-Lys motif. Responsible for the N-terminal methylation of KLHL31, MYL2, MYL3, RB1, RCC1, RPL23A and SET. Required during mitosis for normal bipolar spindle formation and chromosome segregation via its action on RCC1. 
Sequence Annotation
 REGION 91 93 S-adenosyl-L-methionine binding.
 REGION 119 120 S-adenosyl-L-methionine binding.
 BINDING 69 69 S-adenosyl-L-methionine; via carbonyl
 BINDING 74 74 S-adenosyl-L-methionine.
 BINDING 135 135 S-adenosyl-L-methionine; via carbonyl
 MOD_RES 1 1 N-acetylmethionine.
 MOD_RES 2 2 N-acetylthreonine; in N-terminal Xaa-Pro-  
Keyword
 3D-structure; Acetylation; Alternative splicing; Complete proteome; Direct protein sequencing; Methyltransferase; Nucleus; Reference proteome; S-adenosyl-L-methionine; Transferase. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 223 AA 
Protein Sequence
MTSEVIEDEK QFYSKAKTYW KQIPPTVDGM LGGYGHISSI DINSSRKFLQ RFLREGPNKT 60
GTSCALDCGA GIGRITKRLL LPLFREVDMV DITEDFLVQA KTYLGEEGKR VRNYFCCGLQ 120
DFTPEPDSYD VIWIQWVIGH LTDQHLAEFL RRCKGSLRPN GIIVIKDNMA QEGVILDDVD 180
SSVCRDLDVV RRIICSAGLS LLAEERQENL PDEIYHVYSF ALR 223 
Gene Ontology
 GO:0005737; C:cytoplasm; IDA:HPA.
 GO:0005634; C:nucleus; IDA:UniProtKB.
 GO:0008276; F:protein methyltransferase activity; IDA:UniProtKB.
 GO:0007059; P:chromosome segregation; IMP:UniProtKB.
 GO:0018012; P:N-terminal peptidyl-alanine trimethylation; IEA:Compara.
 GO:0018016; P:N-terminal peptidyl-proline dimethylation; IDA:UniProtKB.
 GO:0035572; P:N-terminal peptidyl-serine dimethylation; IDA:UniProtKB.
 GO:0035573; P:N-terminal peptidyl-serine trimethylation; IDA:UniProtKB.
 GO:0007051; P:spindle organization; IMP:UniProtKB. 
Interpro
 IPR008576; DUF858_MeTrfase_lik. 
Pfam
 PF05891; Methyltransf_PK 
SMART
  
PROSITE
  
PRINTS