CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-003422
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Putative acid--amine ligase YgiC 
Protein Synonyms/Alias
  
Gene Name
 ygiC 
Gene Synonyms/Alias
 b3038; JW3006 
Created Date
 July 27, 2013 
Organism
 Escherichia coli (strain K12) 
NCBI Taxa ID
 83333 
Lysine Modification
Position
Peptide
Type
References
65MCLKVVEKVIASDELacetylation[1]
80MTKFRIPKHTWSFVRacetylation[1]
247LREMFSTKLEDAGVRacetylation[1]
Reference
 [1] Acetyl-Phosphate Is a Critical Determinant of Lysine Acetylation in E. coli.
 Weinert BT, Iesmantavicius V, Wagner SA, Schölz C, Gummesson B, Beli P, Nyström T, Choudhary C.
 Mol Cell. 2013 Jul 25;51(2):265-72. [PMID: 23830618
Functional Description
 May be a ligase forming an amide bond. Shows ATPase activity. Despite its similarity to the C-terminal synthetase domain of Gss, is not a glutathionylspermidine (Gsp) synthetase. Cannot synthesize Gsp, glutathione (GSH), or GSH intermediates, from GSH and spermidine, cysteine and glutamate, gamma- glutamylcysteine and spermidine, and gamma-glutamylcysteine and glycine. Does not bind to Gsp. 
Sequence Annotation
 NP_BIND 100 102 ATP (By similarity).
 NP_BIND 371 373 ATP (By similarity).
 METAL 102 102 Magnesium 1 (By similarity).
 METAL 115 115 Magnesium 1 (By similarity).
 METAL 115 115 Magnesium 2 (By similarity).
 METAL 117 117 Magnesium 2 (By similarity).
 BINDING 267 267 ATP (By similarity).
 BINDING 302 302 ATP (By similarity).
 BINDING 309 309 ATP; via amide nitrogen (By similarity).
 BINDING 336 336 ATP (By similarity).  
Keyword
 ATP-binding; Complete proteome; Ligase; Magnesium; Metal-binding; Nucleotide-binding; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 386 AA 
Protein Sequence
MERVSITERP DWREKAHEYG FNFHTMYGEP YWCEDAYYKL TLAQVEKLEE VTAELHQMCL 60
KVVEKVIASD ELMTKFRIPK HTWSFVRQSW LTHQPSLYSR LDLAWDGTGE PKLLENNADT 120
PTSLYEAAFF QWIWLEDQLN AGNLPEGSDQ FNSLQEKLID RFVELREQYG FQLLHLTCCR 180
DTVEDRGTIQ YLQDCATEAE IATEFLYIDD IGLGEKGQFT DLQDQVISNL FKLYPWEFML 240
REMFSTKLED AGVRWLEPAW KSIISNKALL PLLWEMFPNH PNLLPAYFAE DDHPQMEKYV 300
VKPIFSREGA NVSIIENGKT IEAAEGPYGE EGMIVQQFHP LPKFGDSYML IGSWLVNDQP 360
AGIGIREDRA LITQDMSRFY PHIFVE 386 
Gene Ontology
 GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
 GO:0016874; F:ligase activity; IEA:UniProtKB-KW.
 GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. 
Interpro
 IPR005494; GSPS_pre-ATP-grasp-like_dom.
 IPR016185; PreATP-grasp_dom. 
Pfam
 PF03738; GSP_synth 
SMART
  
PROSITE
  
PRINTS