CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-006293
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 26S protease regulatory subunit 7 homolog 
Protein Synonyms/Alias
 Protein CIM5; Tat-binding homolog 3 
Gene Name
 RPT1 
Gene Synonyms/Alias
 CIM5; YTA3; YKL145W 
Created Date
 July 27, 2013 
Organism
 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 
NCBI Taxa ID
 559292 
Lysine Modification
Position
Peptide
Type
References
38EGDIQVLKSYGAAPYacetylation[1]
48GAAPYAAKLKQTENDacetylation[1]
48GAAPYAAKLKQTENDubiquitination[2]
107ARCTKIIKGNGESDEubiquitination[3]
150AKYVINLKQIAKFVVacetylation[1]
154INLKQIAKFVVGLGEubiquitination[2]
282IGSELVQKYVGEGARubiquitination[2]
374RPGRIDRKVEFSLPDubiquitination[2]
394NIFRIHSKSMSVERGubiquitination[2]
441RRKVATEKDFLKAVDubiquitination[2]
449DFLKAVDKVISGYKKubiquitination[2]
Reference
 [1] Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae.
 Henriksen P, Wagner SA, Weinert BT, Sharma S, Bacinskaja G, Rehman M, Juffer AH, Walther TC, Lisby M, Choudhary C.
 Mol Cell Proteomics. 2012 Nov;11(11):1510-22. [PMID: 22865919]
 [2] Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation.
 Swaney DL, Beltrao P, Starita L, Guo A, Rush J, Fields S, Krogan NJ, VillĂ©n J.
 Nat Methods. 2013 Jul;10(7):676-82. [PMID: 23749301]
 [3] Sites of ubiquitin attachment in Saccharomyces cerevisiae.
 Starita LM, Lo RS, Eng JK, von Haller PD, Fields S.
 Proteomics. 2012 Jan;12(2):236-40. [PMID: 22106047
Functional Description
 The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex (By similarity). 
Sequence Annotation
 NP_BIND 250 257 ATP (Potential).
 MOD_RES 164 164 Phosphoserine.
 MOD_RES 231 231 Phosphoserine.  
Keyword
 3D-structure; ATP-binding; Complete proteome; Cytoplasm; Nucleotide-binding; Nucleus; Phosphoprotein; Proteasome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 467 AA 
Protein Sequence
MPPKEDWEKY KAPLEDDDKK PDDDKIVPLT EGDIQVLKSY GAAPYAAKLK QTENDLKDIE 60
ARIKEKAGVK ESDTGLAPSH LWDIMGDRQR LGEEHPLQVA RCTKIIKGNG ESDETTTDNN 120
NSGNSNSNSN QQSTDADEDD EDAKYVINLK QIAKFVVGLG ERVSPTDIEE GMRVGVDRSK 180
YNIELPLPPR IDPSVTMMTV EEKPDVTYSD VGGCKDQIEK LREVVELPLL SPERFATLGI 240
DPPKGILLYG PPGTGKTLCA RAVANRTDAT FIRVIGSELV QKYVGEGARM VRELFEMART 300
KKACIIFFDE IDAVGGARFD DGAGGDNEVQ RTMLELITQL DGFDPRGNIK VMFATNRPNT 360
LDPALLRPGR IDRKVEFSLP DLEGRANIFR IHSKSMSVER GIRWELISRL CPNSTGAELR 420
SVCTEAGMFA IRARRKVATE KDFLKAVDKV ISGYKKFSST SRYMQYN 467 
Gene Ontology
 GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
 GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
 GO:0008540; C:proteasome regulatory particle, base subcomplex; IDA:SGD.
 GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
 GO:0016887; F:ATPase activity; ISS:SGD.
 GO:0045732; P:positive regulation of protein catabolic process; IDA:SGD.
 GO:0045899; P:positive regulation of RNA polymerase II transcriptional preinitiation complex assembly; IMP:SGD.
 GO:0070682; P:proteasome regulatory particle assembly; IMP:SGD.
 GO:0006511; P:ubiquitin-dependent protein catabolic process; IPI:SGD. 
Interpro
 IPR005937; 26S_Psome_P45.
 IPR003593; AAA+_ATPase.
 IPR003959; ATPase_AAA_core.
 IPR003960; ATPase_AAA_CS.
 IPR027417; P-loop_NTPase. 
Pfam
 PF00004; AAA 
SMART
 SM00382; AAA 
PROSITE
 PS00674; AAA 
PRINTS