UniProt Accession

 D3ZIK1_RAT; D3ZIK1 

Genbank Protein ID

 AABR06101959; AABR06101960; AABR06101961 

Genbank Nucleotide ID

  

Protein Name

 Protein Lin28b 

Protein Synonyms/Alias

  

Gene Name

 Lin28b 

Gene Synonyms/Alias

  

Created Date

 July 27, 2013 

Organism

 Rattus norvegicus (Rat) 

NCBI Taxa ID

 10116 

Lysine Modification

Position	Peptide	Type	References
113	LGSERRPKGKTLQKR	acetylation	[1]
115	SERRPKGKTLQKRKP	acetylation	[1]

Reference

 [1] Proteomic analysis of lysine acetylation sites in rat tissues reveals organ specificity and subcellular patterns.
 Lundby A, Lage K, Weinert BT, Bekker-Jensen DB, Secher A, Skovgaard T, Kelstrup CD, Dmytriyev A, Choudhary C, Lundby C, Olsen JV.
 Cell Rep. 2012 Aug 30;2(2):419-31. [PMID: 22902405] 

Functional Description

  

Sequence Annotation

  

Keyword

 Complete proteome; Metal-binding; Reference proteome; Zinc; Zinc-finger. 

Sequence Source

 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 

Protein Length

 271 AA 

Protein Sequence

Gene Ontology

 GO:0005739; C:mitochondrion; IEA:Compara.
 GO:0005634; C:nucleus; IEA:Compara.
 GO:0003677; F:DNA binding; IEA:InterPro.
 GO:0003723; F:RNA binding; IEA:Compara.
 GO:0008270; F:zinc ion binding; IEA:InterPro.
 GO:0010587; P:miRNA catabolic process; IEA:Compara.
 GO:0031054; P:pre-miRNA processing; IEA:Compara.
 GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.
 GO:0031123; P:RNA 3'-end processing; IEA:Compara. 

Interpro

 IPR011129; Cold_shock_prot.
 IPR002059; CSP_DNA-bd.
 IPR012340; NA-bd_OB-fold.
 IPR001878; Znf_CCHC. 

Pfam

 PF00313; CSD
 PF00098; zf-CCHC 

SMART

 SM00357; CSP
 SM00343; ZnF_C2HC 

PROSITE

 PS50158; ZF_CCHC 

PRINTS

 PR00050; COLDSHOCK.