CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-014556
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 GTP-binding protein Rab-3D 
Protein Synonyms/Alias
  
Gene Name
 Rab3d 
Gene Synonyms/Alias
 Rab16 
Created Date
 July 27, 2013 
Organism
 Rattus norvegicus (Rat) 
NCBI Taxa ID
 10116 
Lysine Modification
Position
Peptide
Type
References
173AKENINVKQVFERLVacetylation[1]
Reference
 [1] Proteomic analysis of lysine acetylation sites in rat tissues reveals organ specificity and subcellular patterns.
 Lundby A, Lage K, Weinert BT, Bekker-Jensen DB, Secher A, Skovgaard T, Kelstrup CD, Dmytriyev A, Choudhary C, Lundby C, Olsen JV.
 Cell Rep. 2012 Aug 30;2(2):419-31. [PMID: 22902405
Functional Description
 Protein transport. Probably involved in regulated exocytosis (By similarity). 
Sequence Annotation
 NP_BIND 29 37 GTP (By similarity).
 NP_BIND 77 81 GTP (By similarity).
 NP_BIND 135 138 GTP (By similarity).
 NP_BIND 165 167 GTP (By similarity).
 MOTIF 51 59 Effector region (By similarity).
 MOD_RES 219 219 Cysteine methyl ester; partial.
 LIPID 217 217 S-geranylgeranyl cysteine (By
 LIPID 219 219 S-geranylgeranyl cysteine (By  
Keyword
 Cell membrane; Complete proteome; Exocytosis; GTP-binding; Lipoprotein; Membrane; Methylation; Nucleotide-binding; Prenylation; Protein transport; Reference proteome; Transport. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 219 AA 
Protein Sequence
MASASEPPAS PRDAADQNFD YMFKLLLIGN SSVGKTSFLF RYADDSFTPA FVSTVGIDFK 60
VKTVYRHDKR IKLQIWDTAG QERYRTITTA YYRGAMGFLL MYDIANQESF TAVQDWATQI 120
KTYSWDNAQV ILVGNKCDLE DERVVSAEDG QRLAGDLGFE FFEASAKENI NVKQVFERLV 180
DIICDKMNES LEPSSSPGSN GKGPALGDTP PPQPSSCGC 219 
Gene Ontology
 GO:0005739; C:mitochondrion; IEA:Compara.
 GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
 GO:0030133; C:transport vesicle; IDA:RGD.
 GO:0042588; C:zymogen granule; IEA:Compara.
 GO:0005525; F:GTP binding; IEA:UniProtKB-KW.
 GO:0006887; P:exocytosis; IEA:UniProtKB-KW.
 GO:0018125; P:peptidyl-cysteine methylation; IEA:Compara.
 GO:0015031; P:protein transport; IEA:UniProtKB-KW.
 GO:0017157; P:regulation of exocytosis; IEA:Compara.
 GO:0007264; P:small GTPase mediated signal transduction; IEA:InterPro. 
Interpro
 IPR027417; P-loop_NTPase.
 IPR005225; Small_GTP-bd_dom.
 IPR001806; Small_GTPase.
 IPR003579; Small_GTPase_Rab_type. 
Pfam
 PF00071; Ras 
SMART
 SM00175; RAB 
PROSITE
 PS51419; RAB 
PRINTS
 PR00449; RASTRNSFRMNG.