CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-016690
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Glycerophosphocholine phosphodiesterase GPCPD1 
Protein Synonyms/Alias
 Glycerophosphodiester phosphodiesterase 5; Preimplantation protein 4 
Gene Name
 Gpcpd1 
Gene Synonyms/Alias
 Gde5; Kiaa1434; Prei4 
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
412FDQLQLLKLSHVTALubiquitination[1]
425ALKTKDRKQSLYEEEubiquitination[1]
579PSYVQEAKAKGLVIFubiquitination[1]
602PENRRKLKEFGVNGLubiquitination[1]
Reference
 [1] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023
Functional Description
 May be involved in the negative regulation of skeletal muscle differentiation, independently of its glycerophosphocholine phosphodiesterase activity. 
Sequence Annotation
 DOMAIN 1 115 CBM20.
 DOMAIN 326 616 GDPD.
 REGION 88 89 Substrate binding (Potential).
 BINDING 70 70 Substrate (Potential).
 MOD_RES 611 611 Phosphotyrosine.  
Keyword
 Alternative splicing; Complete proteome; Cytoplasm; Hydrolase; Phosphoprotein; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 675 AA 
Protein Sequence
MTPSQVTFEI RGTLLPGEVF AICGSCDALG NWNPQNAVAL INENETGDSV LWKAVIALNR 60
GVSVKYRYFR GCFLEPKTIG GPCQVIVHKW ETHLQPRSIT PLESEIIIDD GQFGIHNGVE 120
TLDSGWLTCQ TEIRLRLHFS EKPPVSISKK KFKKSRFRVK LTLEGLEEDE DDDDDKVSPT 180
VLHKMSNSLE ISLISDNEFK CRHSQPECGY GLQPDRWTEY SIQTMEPDNL ELIFDFFEED 240
LSEHVVQGDV LPGHVGTACL LSSTIAESGR SAGILTLPIM SRNSRKTIGK VRVDFIIIKP 300
LPGYSCSMQS SFSKYWKPRI PLDVGHRGAG NSTTTAKLAK VQENTIASLR NAASHGAAFV 360
EFDVHLSKDF VPVVYHDLTC CLTMKRKYEA DPVELFEIPV KELTFDQLQL LKLSHVTALK 420
TKDRKQSLYE EENFFSENQP FPSLKMVLES LPENVGFNIE IKWICQHRDG VWDGNLSTYF 480
DMNVFLDIIL KTVLENSGKR RIVFSSFDAD ICTMVRQKQN KYPILFLTQG KSDIYPELMD 540
LRSRTTPIAM SFAQFENILG INAHTEDLLR NPSYVQEAKA KGLVIFCWGD DTNDPENRRK 600
LKEFGVNGLI YDRIYDWMPE QPNIFQVEQL ERLKQELPEL KNCLCPTVSH FIPSSFCVEP 660
DIHVDANGID SVENA 675 
Gene Ontology
 GO:0005829; C:cytosol; TAS:Reactome.
 GO:0047389; F:glycerophosphocholine phosphodiesterase activity; IEA:EC.
 GO:0008889; F:glycerophosphodiester phosphodiesterase activity; IEA:InterPro.
 GO:2001070; F:starch binding; IEA:InterPro.
 GO:0006071; P:glycerol metabolic process; IEA:InterPro.
 GO:0006629; P:lipid metabolic process; IEA:InterPro. 
Interpro
 IPR013784; Carb-bd-like_fold.
 IPR002044; CBM_fam20.
 IPR004129; GlyceroP-diester-Pdiesterase.
 IPR013783; Ig-like_fold.
 IPR017946; PLC-like_Pdiesterase_TIM-brl. 
Pfam
 PF00686; CBM_20
 PF03009; GDPD 
SMART
 SM01065; CBM_2 
PROSITE
 PS51166; CBM20 
PRINTS