CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-003581
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Bifunctional (p)ppGpp synthase/hydrolase SpoT 
Protein Synonyms/Alias
 GTP pyrophosphokinase; (p)ppGpp synthase; ATP:GTP 3'-pyrophosphotransferase; Stringent response-like protein; ppGpp synthase II; Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; Penta-phosphate guanosine-3'-pyrophosphohydrolase; (ppGpp)ase 
Gene Name
 spoT 
Gene Synonyms/Alias
 b3650; JW3625 
Created Date
 July 27, 2013 
Organism
 Escherichia coli (strain K12) 
NCBI Taxa ID
 83333 
Lysine Modification
Position
Peptide
Type
References
102ELVEGVSKLDKLKFRacetylation[1]
136DIRVILIKLADRTHNacetylation[1]
154LGSLRPDKRRRIAREacetylation[1]
179RLGIHHIKTELEELGacetylation[1]
215NRKEMIQKILSEIEGacetylation[1, 2]
285GQMHSLYKPRPGRVKacetylation[1]
611GYQKEPEKFMAVEWDacetylation[1]
662QSLNTEEKDGRVYSAacetylation[1]
Reference
 [1] Acetyl-Phosphate Is a Critical Determinant of Lysine Acetylation in E. coli.
 Weinert BT, Iesmantavicius V, Wagner SA, Schölz C, Gummesson B, Beli P, Nyström T, Choudhary C.
 Mol Cell. 2013 Jul 25;51(2):265-72. [PMID: 23830618]
 [2] Comprehensive profiling of protein lysine acetylation in Escherichia coli.
 Zhang K, Zheng S, Yang JS, Chen Y, Cheng Z.
 J Proteome Res. 2013 Feb 1;12(2):844-51. [PMID: 23294111
Functional Description
 In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. This enzyme catalyzes both the synthesis and degradation of ppGpp. The second messengers ppGpp and c-di-GMP together control biofilm formation in response to translational stress; ppGpp represses biofilm formation while c- di-GMP induces it. 
Sequence Annotation
 DOMAIN 45 144 HD.
 DOMAIN 628 702 ACT.  
Keyword
 Complete proteome; Cytoplasm; Hydrolase; Kinase; Manganese; Reference proteome; Transferase. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 702 AA 
Protein Sequence
MYLFESLNQL IQTYLPEDQI KRLRQAYLVA RDAHEGQTRS SGEPYITHPV AVACILAEMK 60
LDYETLMAAL LHDVIEDTPA TYQDMEQLFG KSVAELVEGV SKLDKLKFRD KKEAQAENFR 120
KMIMAMVQDI RVILIKLADR THNMRTLGSL RPDKRRRIAR ETLEIYSPLA HRLGIHHIKT 180
ELEELGFEAL YPNRYRVIKE VVKAARGNRK EMIQKILSEI EGRLQEAGIP CRVSGREKHL 240
YSIYCKMVLK EQRFHSIMDI YAFRVIVNDS DTCYRVLGQM HSLYKPRPGR VKDYIAIPKA 300
NGYQSLHTSM IGPHGVPVEV QIRTEDMDQM AEMGVAAHWA YKEHGETSTT AQIRAQRWMQ 360
SLLELQQSAG SSFEFIESVK SDLFPDEIYV FTPEGRIVEL PAGATPVDFA YAVHTDIGHA 420
CVGARVDRQP YPLSQPLTSG QTVEIITAPG ARPNAAWLNF VVSSKARAKI RQLLKNLKRD 480
DSVSLGRRLL NHALGGSRKL NEIPQENIQR ELDRMKLATL DDLLAEIGLG NAMSVVVAKN 540
LQHGDASIPP ATQSHGHLPI KGADGVLITF AKCCRPIPGD PIIAHVSPGK GLVIHHESCR 600
NIRGYQKEPE KFMAVEWDKE TAQEFITEIK VEMFNHQGAL ANLTAAINTT TSNIQSLNTE 660
EKDGRVYSAF IRLTARDRVH LANIMRKIRV MPDVIKVTRN RN 702 
Gene Ontology
 GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
 GO:0008728; F:GTP diphosphokinase activity; IEA:EC.
 GO:0008893; F:guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity; IDA:EcoCyc.
 GO:0016301; F:kinase activity; IEA:UniProtKB-KW.
 GO:0046872; F:metal ion binding; IEA:InterPro.
 GO:0008081; F:phosphoric diester hydrolase activity; IEA:InterPro.
 GO:0015970; P:guanosine tetraphosphate biosynthetic process; IEA:UniProtKB-UniPathway.
 GO:0015949; P:nucleobase-containing small molecule interconversion; IMP:EcoCyc. 
Interpro
 IPR026020; (p)ppGpp_Synthase.
 IPR012675; Beta-grasp_dom.
 IPR003607; HD/PDEase_dom.
 IPR006674; HD_domain.
 IPR004811; RelA/Spo_fam.
 IPR007685; RelA_SpoT.
 IPR004095; TGS.
 IPR012676; TGS-like. 
Pfam
 PF01966; HD
 PF04607; RelA_SpoT
 PF02824; TGS 
SMART
 SM00471; HDc
 SM00954; RelA_SpoT 
PROSITE
 PS51671; ACT 
PRINTS