CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-036364
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 Isocitrate dehydrogenase [NADP], mitochondrial 
Protein Synonyms/Alias
  
Gene Name
 Idh2 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
45HYAEKRIKVEKPVVEacetylation[1, 2, 3, 4]
48EKRIKVEKPVVEMDGacetylation[1, 2, 3, 4]
48EKRIKVEKPVVEMDGubiquitination[5]
67RIIWQFIKEKLILPHacetylation[2, 4]
67RIIWQFIKEKLILPHubiquitination[5]
69IWQFIKEKLILPHVDacetylation[1, 2, 3, 4]
80PHVDVQLKYFDLGLPacetylation[3, 4, 6, 7]
80PHVDVQLKYFDLGLPsuccinylation[7]
106DSALATQKYSVAVKCacetylation[1, 3, 4, 7, 8]
106DSALATQKYSVAVKCsuccinylation[7]
106DSALATQKYSVAVKCubiquitination[5]
133FKLKKMWKSPNGTIRacetylation[1]
155FREPIICKNIPRLVPacetylation[1, 3, 4, 7, 9]
155FREPIICKNIPRLVPsuccinylation[7]
166RLVPGWTKPITIGRHacetylation[1, 2, 3, 4, 7, 8, 9, 10]
166RLVPGWTKPITIGRHsuccinylation[7]
166RLVPGWTKPITIGRHubiquitination[5]
180HAHGDQYKATDFVVDacetylation[1, 3, 4, 6, 7, 8, 10]
180HAHGDQYKATDFVVDsuccinylation[7]
180HAHGDQYKATDFVVDubiquitination[5]
193VDRAGTFKLVFTPKDacetylation[1, 2, 3, 4, 7]
193VDRAGTFKLVFTPKDsuccinylation[7]
199FKLVFTPKDGSSAKEacetylation[1, 3, 4, 7]
199FKLVFTPKDGSSAKEsuccinylation[7]
199FKLVFTPKDGSSAKEubiquitination[5]
Reference
 [1] Quantitative assessment of the impact of the gut microbiota on lysine epsilon-acetylation of host proteins using gnotobiotic mice.
 Simon GM, Cheng J, Gordon JI.
 Proc Natl Acad Sci U S A. 2012 Jul 10;109(28):11133-8. [PMID: 22733758]
 [2] Quantitative acetylome analysis reveals the roles of SIRT1 in regulating diverse substrates and cellular pathways.
 Chen Y, Zhao W, Yang JS, Cheng Z, Luo H, Lu Z, Tan M, Gu W, Zhao Y.
 Mol Cell Proteomics. 2012 Oct;11(10):1048-62. [PMID: 22826441]
 [3] Label-free quantitative proteomics of the lysine acetylome in mitochondria identifies substrates of SIRT3 in metabolic pathways.
 Rardin MJ, Newman JC, Held JM, Cusack MP, Sorensen DJ, Li B, Schilling B, Mooney SD, Kahn CR, Verdin E, Gibson BW.
 Proc Natl Acad Sci U S A. 2013 Apr 16;110(16):6601-6. [PMID: 23576753]
 [4] Quantification of mitochondrial acetylation dynamics highlights prominent sites of metabolic regulation.
 Still AJ, Floyd BJ, Hebert AS, Bingman CA, Carson JJ, Gunderson DR, Dolan BK, Grimsrud PA, Dittenhafer-Reed KE, Stapleton DS, Keller MP, Westphall MS, Denu JM, Attie AD, Coon JJ, Pagliarini DJ.
 J Biol Chem. 2013 Jul 17;. [PMID: 23864654]
 [5] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023]
 [6] Circadian acetylome reveals regulation of mitochondrial metabolic pathways.
 Masri S, Patel VR, Eckel-Mahan KL, Peleg S, Forne I, Ladurner AG, Baldi P, Imhof A, Sassone-Corsi P.
 Proc Natl Acad Sci U S A. 2013 Feb 26;110(9):3339-44. [PMID: 23341599]
 [7] SIRT5-Mediated Lysine Desuccinylation Impacts Diverse Metabolic Pathways.
 Park J, Chen Y, Tishkoff DX, Peng C, Tan M, Dai L, Xie Z, Zhang Y, Zwaans BM, Skinner ME, Lombard DB, Zhao Y.
 Mol Cell. 2013 Jun 27;50(6):919-30. [PMID: 23806337]
 [8] Proteomic investigations of lysine acetylation identify diverse substrates of mitochondrial deacetylase sirt3.
 Sol EM, Wagner SA, Weinert BT, Kumar A, Kim HS, Deng CX, Choudhary C.
 PLoS One. 2012;7(12):e50545. [PMID: 23236377]
 [9] The fasted/fed mouse metabolic acetylome: N6-acetylation differences suggest acetylation coordinates organ-specific fuel switching.
 Yang L, Vaitheesvaran B, Hartil K, Robinson AJ, Hoopmann MR, Eng JK, Kurland IJ, Bruce JE.
 J Proteome Res. 2011 Sep 2;10(9):4134-49. [PMID: 21728379]
 [10] Mitochondrial acetylome analysis in a mouse model of alcohol-induced liver injury utilizing SIRT3 knockout mice.
 Fritz KS, Galligan JJ, Hirschey MD, Verdin E, Petersen DR.
 J Proteome Res. 2012 Mar 2;11(3):1633-43. [PMID: 22309199
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 294 AA 
Protein Sequence
MAGYLRAVSS LCRASGSART WAPAALTVPS WPEQPRRHYA EKRIKVEKPV VEMDGDEMTR 60
IIWQFIKEKL ILPHVDVQLK YFDLGLPNRD QTNDQVTIDS ALATQKYSVA VKCATITPDE 120
ARVEEFKLKK MWKSPNGTIR NILGGTVFRE PIICKNIPRL VPGWTKPITI GRHAHGDQYK 180
ATDFVVDRAG TFKLVFTPKD GSSAKEWEVY NFPAGGVGMG MYNTDEESRS LMEVLLALAL 240
ALGPWQSGSF QPGGHAMPAL PTVHFGLRAQ LLPVLYPEEM AALLEHQEHH SEGL 294 
Gene Ontology
 GO:0005743; C:mitochondrial inner membrane; IDA:MGI.
 GO:0004450; F:isocitrate dehydrogenase (NADP+) activity; IDA:MGI.
 GO:0006102; P:isocitrate metabolic process; IEA:InterPro. 
Interpro
 IPR004790; Isocitrate_DH_NADP.
 IPR024084; IsoPropMal-DH-like_dom. 
Pfam
 PF00180; Iso_dh 
SMART
  
PROSITE
  
PRINTS