[1] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [
PMID: 21890473]
[2] Systematic and quantitative assessment of the ubiquitin-modified proteome.
Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
Mol Cell. 2011 Oct 21;44(2):325-40. [
PMID: 21906983]
[3] hCKSAAP_UbSite: improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties.
Chen Z, Zhou Y, Song J, Zhang Z.
Biochim Biophys Acta. 2013 Aug;1834(8):1461-7. [
PMID: 23603789]
[4] Tip60-dependent acetylation of p53 modulates the decision between cell-cycle arrest and apoptosis.
Tang Y, Luo J, Zhang W, Gu W.
Mol Cell. 2006 Dec 28;24(6):827-39. [
PMID: 17189186]
[5] Acetylation of the p53 DNA-binding domain regulates apoptosis induction.
Sykes SM, Mellert HS, Holbert MA, Li K, Marmorstein R, Lane WS, McMahon SB.
Mol Cell. 2006 Dec 28;24(6):841-51. [
PMID: 17189187]
[6] PDCD5 interacts with Tip60 and functions as a cooperator in acetyltransferase activity and DNA damage-induced apoptosis.
Xu L, Chen Y, Song Q, Xu D, Wang Y, Ma D.
Neoplasia. 2009 Apr;11(4):345-54. [
PMID: 19308289]
[7] Ubiquitin ligase substrate identification through quantitative proteomics at both the protein and peptide levels.
Lee KA, Hammerle LP, Andrews PS, Stokes MP, Mustelin T, Silva JC, Black RA, Doedens JR.
J Biol Chem. 2011 Dec 2;286(48):41530-8. [
PMID: 21987572]
[8] Proteome-wide identification of ubiquitylation sites by conjugation of engineered lysine-less ubiquitin.
Oshikawa K, Matsumoto M, Oyamada K, Nakayama KI.
J Proteome Res. 2012 Feb 3;11(2):796-807. [
PMID: 22053931]
[9] Acetylation is indispensable for p53 activation.
Tang Y, Zhao W, Chen Y, Zhao Y, Gu W.
Cell. 2008 May 16;133(4):612-26. [
PMID: 18485870]
[10] Identification and characterization of a novel p300-mediated p53 acetylation site, lysine 305.
Wang YH, Tsay YG, Tan BC, Lo WY, Lee SC.
J Biol Chem. 2003 Jul 11;278(28):25568-76. [
PMID: 12724314]
[11] Lysine acetylation targets protein complexes and co-regulates major cellular functions.
Choudhary C, Kumar C, Gnad F, Nielsen ML, Rehman M, Walther TC, Olsen JV, Mann M.
Science. 2009 Aug 14;325(5942):834-40. [
PMID: 19608861]
[12] Regulation of cellular metabolism by protein lysine acetylation.
Zhao S, Xu W, Jiang W, Yu W, Lin Y, Zhang T, Yao J, Zhou L, Zeng Y, Li H, Li Y, Shi J, An W, Hancock SM, He F, Qin L, Chin J, Yang P, Chen X, Lei Q, Xiong Y, Guan KL.
Science. 2010 Feb 19;327(5968):1000-4. [
PMID: 20167786]
[13] Molecular characterization of propionyllysines in non-histone proteins.
Cheng Z, Tang Y, Chen Y, Kim S, Liu H, Li SS, Gu W, Zhao Y.
Mol Cell Proteomics. 2009 Jan;8(1):45-52. [
PMID: 18753126]
[14] Identification of new p53 acetylation sites in COS-1 cells.
Joubel A, Chalkley RJ, Medzihradszky KF, Hondermarck H, Burlingame AL.
Mol Cell Proteomics. 2009 Jun;8(6):1167-73. [
PMID: 19155208]
[15] Lysine propionylation and butyrylation are novel post-translational modifications in histones.
Chen Y, Sprung R, Tang Y, Ball H, Sangras B, Kim SC, Falck JR, Peng J, Gu W, Zhao Y.
Mol Cell Proteomics. 2007 May;6(5):812-9. [
PMID: 17267393]
[16] DNA damage activates p53 through a phosphorylation-acetylation cascade.
Sakaguchi K, Herrera JE, Saito S, Miki T, Bustin M, Vassilev A, Anderson CW, Appella E.
Genes Dev. 1998 Sep 15;12(18):2831-41. [
PMID: 9744860]
[17] p53 sites acetylated in vitro by PCAF and p300 are acetylated in vivo in response to DNA damage.
Liu L, Scolnick DM, Trievel RC, Zhang HB, Marmorstein R, Halazonetis TD, Berger SL.
Mol Cell Biol. 1999 Feb;19(2):1202-9. [
PMID: 9891054]
[18] Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level.
Danielsen JM, Sylvestersen KB, Bekker-Jensen S, Szklarczyk D, Poulsen JW, Horn H, Jensen LJ, Mailand N, Nielsen ML.
Mol Cell Proteomics. 2011 Mar;10(3):M110.003590. [
PMID: 21139048]
[19] Global identification of modular cullin-RING ligase substrates.
Emanuele MJ, Elia AE, Xu Q, Thoma CR, Izhar L, Leng Y, Guo A, Chen YN, Rush J, Hsu PW, Yen HC, Elledge SJ.
Cell. 2011 Oct 14;147(2):459-74. [
PMID: 21963094]
[20] Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW.
Nature. 2013 Apr 18;496(7445):372-6. [
PMID: 23503661]
[21] Activation of p53 sequence-specific DNA binding by acetylation of the p53 C-terminal domain.
Gu W, Roeder RG.
Cell. 1997 Aug 22;90(4):595-606. [
PMID: 9288740]
[22] p85α mediates p53 K370 acetylation by p300 and regulates its promoter-specific transactivity in the cellular UVB response.
Song L, Gao M, Dong W, Hu M, Li J, Shi X, Hao Y, Li Y, Huang C.
Oncogene. 2011 Mar 17;30(11):1360-71. [
PMID: 21057544]
[23] Repression of p53 activity by Smyd2-mediated methylation.
Huang J, Perez-Burgos L, Placek BJ, Sengupta R, Richter M, Dorsey JA, Kubicek S, Opravil S, Jenuwein T, Berger SL.
Nature. 2006 Nov 30;444(7119):629-32. [
PMID: 17108971]
[24] Update on activities at the Universal Protein Resource (UniProt) in 2013.
e="String">UniProt Consortium.
Nucleic Acids Res. 2013 Jan;41(Database issue):D43-7. [
PMID: 23161681]
[25] Regulation of p53 activity through lysine methylation.
Chuikov S, Kurash JK, Wilson JR, Xiao B, Justin N, Ivanov GS, McKinney K, Tempst P, Prives C, Gamblin SJ, Barlev NA, Reinberg D.
Nature. 2004 Nov 18;432(7015):353-60. [
PMID: 15525938]
[26] Knockdown of CITED2 using short-hairpin RNA sensitizes cancer cells to cisplatin through stabilization of p53 and enhancement of p53-dependent apoptosis.
Wu ZZ, Sun NK, Chao CC.
J Cell Physiol. 2011 Sep;226(9):2415-28. [
PMID: 21660965]
[27] G9a and Glp methylate lysine 373 in the tumor suppressor p53.
Huang J, Dorsey J, Chuikov S, Pérez-Burgos L, Zhang X, Jenuwein T, Reinberg D, Berger SL.
J Biol Chem. 2010 Mar 26;285(13):9636-41. [
PMID: 20118233]
[28] Modulation of p53 function by SET8-mediated methylation at lysine 382.
Shi X, Kachirskaia I, Yamaguchi H, West LE, Wen H, Wang EW, Dutta S, Appella E, Gozani O.
Mol Cell. 2007 Aug 17;27(4):636-46. [
PMID: 17707234]
[29] SUMO-1 modification activates the transcriptional response of p53.
Rodriguez MS, Desterro JM, Lain S, Midgley CA, Lane DP, Hay RT.
EMBO J. 1999 Nov 15;18(22):6455-61. [
PMID: 10562557]
[30] Members of the PIAS family act as SUMO ligases for c-Jun and p53 and repress p53 activity.
Schmidt D, Müller S.
Proc Natl Acad Sci U S A. 2002 Mar 5;99(5):2872-7. [
PMID: 11867732]
[31] Ubc9 fusion-directed SUMOylation (UFDS): a method to analyze function of protein SUMOylation.
Jakobs A, Koehnke J, Himstedt F, Funk M, Korn B, Gaestel M, Niedenthal R.
Nat Methods. 2007 Mar;4(3):245-50. [
PMID: 17277783]
[32] Adenovirus E1B 55-kilodalton protein is a p53-SUMO1 E3 ligase that represses p53 and stimulates its nuclear export through interactions with promyelocytic leukemia nuclear bodies.
Pennella MA, Liu Y, Woo JL, Kim CA, Berk AJ.
J Virol. 2010 Dec;84(23):12210-25. [
PMID: 20861261]