CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-025879
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 MKIAA4075 protein 
Protein Synonyms/Alias
  
Gene Name
 Chd4 
Gene Synonyms/Alias
 mKIAA4075 
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
1078GKLLLLQKMLKNLKEubiquitination[1]
1113FLEHEGYKYERIDGGubiquitination[1]
1593KIEENSLKEEESTEGubiquitination[1]
1898EELLSDMKADVTRLPubiquitination[1]
Reference
 [1] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023
Functional Description
  
Sequence Annotation
  
Keyword
 Metal-binding; Nucleus; Zinc; Zinc-finger. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 1945 AA 
Protein Sequence
RGPQAAGRSS WANSLAGERK GMASGLGSPS PCSAGSEEED MDALLNNSLP PPHPENEEDP 60
DEDLSEAETP KLKKKKKPKK PRDPKIPKSK RQKKERLLLC RQLGDSSGEG PEFVEEEEEV 120
ALRSDSEGSD YTPGKKKKKK LGPKKEKKSK SKRKEEEEEE DEDDDSKEPK SSAQLLEDWG 180
MEDIDHVFSE EDYRTLTNYK AFSQFVRPLI AAKNPKIAVS KMMMVLGAKW REFSTNNPFK 240
GSSGASVAAA AAAAVAVVES MVTATEVAPP PPPVEVPIRK AKTKEGKGPN ARRKPKGSPR 300
VPDAKKPKPK KVAPLKIKLG GFGSKRKRSS SEDDDLDVES DFDDASINSY SVSDGSTSRS 360
SRSRKKLRTA KKKKKGEEEV TAVDGYETDH QDYCEVCQQG GEIILCDTCP RAYHMVCLDP 420
DMEKAPEGKW SCPHCEKEGI QWEAKEDNSE GEEILEEVGG DPEEEDDHHM EFCRVCKDGG 480
ELLCCDTCPS SYHIHCLNPP LPEIPNGEWL CPRCTCPALK GKVQKILIWK WGQPPSPTPV 540
PRPPDADPNT PSPKPLEGRP ERQFFVKWQG MSYWHCSWVS ELQLELHCQV MFRNYQRKND 600
MDEPPSGDFG GDEEKSRKRK NKDPKFAEME ERFYRYGIKP EWMMIHRILN HSVDKKGHVH 660
YLIKWRDLPY DQASWESEDV EIQDYDLFKQ SYWNHRELMR GEEGRPGKKL KKVKLRKLER 720
PPETPTVDPT VKYERQPEYL DATGGTLHPY QMEGLNWLRF SWAQGTDTIL ADEMGLGKTV 780
QTAVFLYSLY KEGHSKGPFL VSAPLSTIIN WEREFEMWAP DMYVVTYVGD KDSRAIIREN 840
EFSFEDNAIR GGKKASRMKK EASVKFHVLL TSYELITIDM AILGSIDWAC LIVDEAHRLK 900
NNQSKFFRVL NGYSLQHKLL LTGTPLQNNL EELFHLLNFL TPERFHNLEG FLEEFADIAK 960
EDQIKKLHDM LGPHMLRRLK ADVFKNMPSK TELIVRVELS PMQKKYYKYI LTRNFEALNA 1020
RGGGNQVSLL NVVMDLKKCC NHPYLFPVAA MEAPKMPNGM YDGSALIRAS GKLLLLQKML 1080
KNLKEGGHRV LIFSQMTKML DLLEDFLEHE GYKYERIDGG ITGNMRQEAI DRFNAPGAQQ 1140
FCFLLSTRAG GLGINLATAD TVIIYDSDWN PHNDIQAFSR AHRIGQNKKV MIYRFVTRAS 1200
VEERITQVAK KKMMLTHLVV RPGLGSKTGS MSKQELDDIL KFGTEELFKD EATDGGGDNK 1260
EGEDSSVIHY DDKAIERLLD RNQDETEDTE LQGMNEYLSS FKVAQYVVRE EEMGEEEEVE 1320
REIIKQEESV DPDYWEKLLR HHYEQQQEDL ARNLGKGKRI RKQVNYNDGS QEDRDWQDDQ 1380
SDNQSDYSVA SEEGDEDFDE RSEAPRRPSR KGLRNDKDKP LPPLLARVGG NIEVLGFNAR 1440
QRKAFLNAIM RYGMPPQDAF TTQWLVRDLR GKSEKEFKAY VSLFMRHLCE PGADGAETFA 1500
DGVPREGLSR QHVLTRIGVM SLIRKKVQEF EHVNGRWSMP ELAEVEENKK MSQPGSPSPK 1560
TPTPSTPGDT QPNTPAPVPP AEDGIKIEEN SLKEEESTEG EKEVKSSAPE ATVECAQLPA 1620
PATAPATAPA TATAPEDDKA PAEPPEGEEK VEKAEVKERT EEPMETEAKG TTEVEKVEEK 1680
SAVDLTPIVV EDKEEKKEEE EKKDVMLQNG ETPKDLSDEK QKKNSKQRFM FNIADGGFTE 1740
LHSLWQNEER AATVTKKTYE IWHRRHDYWL LAGIINHGYA RWQDIQNDPR YAILNEPFKG 1800
EMNRGNFLEI KNKFLARRFK LLEQALVIEE QLRRAAYLNM SEDPSHPSMA LNTRFAEVEC 1860
LAESHQHLSK ESMAGNKPAN AVLHKVLKQL EELLSDMKAD VTRLPATIAR IPPVAVRLQM 1920
SERNILSRLA NRAPEPPPQQ VAQQQ 1945 
Gene Ontology
 GO:0016581; C:NuRD complex; IDA:MGI.
 GO:0005524; F:ATP binding; IEA:InterPro.
 GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.
 GO:0003677; F:DNA binding; IEA:InterPro.
 GO:0008270; F:zinc ion binding; IEA:InterPro.
 GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro. 
Interpro
 IPR012957; CHD_C2.
 IPR012958; CHD_N.
 IPR023780; Chromo_domain.
 IPR000953; Chromo_domain/shadow.
 IPR016197; Chromodomain-like.
 IPR002464; DNA/RNA_helicase_DEAH_CS.
 IPR009462; DUF1086.
 IPR009463; DUF1087.
 IPR014001; Helicase_ATP-bd.
 IPR001650; Helicase_C.
 IPR027417; P-loop_NTPase.
 IPR000330; SNF2_N.
 IPR019786; Zinc_finger_PHD-type_CS.
 IPR011011; Znf_FYVE_PHD.
 IPR001965; Znf_PHD.
 IPR019787; Znf_PHD-finger.
 IPR001841; Znf_RING.
 IPR013083; Znf_RING/FYVE/PHD. 
Pfam
 PF08074; CHDCT2
 PF08073; CHDNT
 PF00385; Chromo
 PF06461; DUF1086
 PF06465; DUF1087
 PF00271; Helicase_C
 PF00628; PHD
 PF00176; SNF2_N 
SMART
 SM00298; CHROMO
 SM00487; DEXDc
 SM00490; HELICc
 SM00249; PHD
 SM00184; RING 
PROSITE
 PS50013; CHROMO_2
 PS00690; DEAH_ATP_HELICASE
 PS51192; HELICASE_ATP_BIND_1
 PS51194; HELICASE_CTER
 PS01359; ZF_PHD_1
 PS50016; ZF_PHD_2 
PRINTS