CPLM 1.0 - Compendium of Protein Lysine Modification
Tag
Content
CPLM ID
CPLM-034931
UniProt Accession
D3ZJ01_RAT
;
D3ZJ01
Genbank Protein ID
AABR06073796
;
AABR06073797
;
CH474000
Genbank Nucleotide ID
EDL91735.1
Protein Name
Protein RGD1307235
Protein Synonyms/Alias
Similar to RIKEN cDNA 2310035C23 (Predicted)
Gene Name
RGD1307235
Gene Synonyms/Alias
RGD1307235_predicted; rCG_24062
Created Date
July 27, 2013
Organism
Rattus norvegicus (Rat)
NCBI Taxa ID
10116
Lysine Modification
Position
Peptide
Type
References
879
GKIFTNT
K
VKPQFQE
ubiquitination
[1]
Reference
[1] Synaptic protein ubiquitination in rat brain revealed by antibody-based ubiquitome analysis.
Na CH, Jones DR, Yang Y, Wang X, Xu Y, Peng J.
J Proteome Res. 2012 Sep 7;11(9):4722-32. [
PMID: 22871113
]
Functional Description
Sequence Annotation
Keyword
Complete proteome; Reference proteome.
Sequence Source
UniProt (SWISSPROT/TrEMBL); GenBank; EMBL
Protein Length
1218 AA
Protein Sequence
MAAMAPGGGG SGSGVNPFLS DSDEDDDEVA ATEDQRAGLR LGAGVGLDPG SAGSLSPQDP 60
MALGSSTRPG LPVEASAAPG ALAGSGETPS RLSIDAIAAQ LLRDQYLLTA LELHTELLES 120
GRELPRLRDY FSNPGNFERQ SGTPPGVGAP GIPGASVVGG AGGREPSTTS GGGQLNRAGS 180
ISTLDSLDFA RYSDDGNRET DERVAVLEFE LRKAKETIQA LRANLTKAAE HEVPLQERKN 240
YKSSPEIQEP IKPLEKRALN FLVNEFLLKN NYKLTSITFS DENDDQDFEL WDDVGLNIPK 300
PPDLLQLYRD FGNHQVTGKD LVDVASGVDE DELEPLTPVL GNIPPTLDTP LPIENSLLVQ 360
KLEDKISLLN NEKWSLMEQI RRLESEMDIL KTEHFTTPAV GDSVQPSLAW PSPKDSEDSK 420
QSPVVNSSDQ DIQKAKDVHL EIPDGADSFI PKEKSSDSFP TKEREELPPS SVSSKATLHF 480
DQPNRKLSPA FHQALLSFCR MSADSRLGSE VSRIADSEKS VMLMLGRCLP HIVPNVLLAK 540
REELIPLILC TACLHPEPKE RDQLLHILFN LIKRPDDEQR QMILTGCVAF ARHVGPTRVE 600
AELLPQCWEQ INHKYPERRL LVAESCGALA PYLPKEIRSS LVLSMLQQML MEDKADLVRE 660
AVIKSLGIIM GYIDDPDKYQ QGFELLLSAL GDPSERVVSA THQVFLPAYA AWTTELGNLQ 720
SHLIPTLLSK IEKLLRDGEH GLDEHKLHMY LSALQSLIPS LFALVLQNAP FSSKAKLHGE 780
VPHIEVTRFP RPMSPLQDVS TIIGSREQLA VLLQLYDYQL EHEGTTGWES LLWVVNQLLP 840
QLIEIVGKIN VTSTACVHEF SRFFWRLCRT FGKIFTNTKV KPQFQEILRL SEENIDSSAG 900
NGVLTKATVP IYATGVLTCY IQEEDRKLLV GFLEDVMTLL SLSHAPLDSL KASFVELGAN 960
PAYHELLLTV LWYGVVHTSA LVRCTAARMF ELLVKGVNET LVAQRVVPAL ITLSSDPEIS 1020
VRIATIPAFG TIMETVIQRE LLERVKMQLA SFLEDPQYQD QHSLHTEVIR TFGRVGPNAE 1080
PRFRDEFVIP HLHKLALVNN LQIVDSKRLD IATHLFEAYS ALSCCFISED LMVNHFLPGL 1140
RCLRTDMEHL SPEHEVILSS MIKECEQKVE NKTVQEPPGS MSIAASLVSE DTKTKFLNKM 1200
GQLTTSGAML ANVFQRKK 1218
Gene Ontology
Interpro
IPR011989
; ARM-like.
IPR016024
; ARM-type_fold.
IPR021133
; HEAT_type_2.
IPR006594
; LisH_dimerisation.
Pfam
SMART
SM00667
; LisH
PROSITE
PS50077
; HEAT_REPEAT
PS50896
; LISH
PRINTS