CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-006761
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Pyridoxal biosynthesis lyase PdxS 
Protein Synonyms/Alias
 Superoxide-inducible protein 7; SOI7 
Gene Name
 pdxS 
Gene Synonyms/Alias
 yaaD; BSU00110 
Created Date
 July 27, 2013 
Organism
 Bacillus subtilis (strain 168) 
NCBI Taxa ID
 224308 
Lysine Modification
Position
Peptide
Type
References
187DELMTEAKNLGAPYEacetylation[1]
Reference
 [1] The acetylproteome of Gram-positive model bacterium Bacillus subtilis.
 Kim D, Yu BJ, Kim JA, Lee YJ, Choi SG, Kang S, Pan JG.
 Proteomics. 2013 May;13(10-11):1726-36. [PMID: 23468065
Functional Description
 Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring. 
Sequence Annotation
  
Keyword
 3D-structure; Complete proteome; Direct protein sequencing; Lyase; Pyridoxal phosphate; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 294 AA 
Protein Sequence
MAQTGTERVK RGMAEMQKGG VIMDVINAEQ AKIAEEAGAV AVMALERVPA DIRAAGGVAR 60
MADPTIVEEV MNAVSIPVMA KARIGHIVEA RVLEAMGVDY IDESEVLTPA DEEFHLNKNE 120
YTVPFVCGCR DLGEATRRIA EGASMLRTKG EPGTGNIVEA VRHMRKVNAQ VRKVVAMSED 180
ELMTEAKNLG APYELLLQIK KDGKLPVVNF AAGGVATPAD AALMMQLGAD GVFVGSGIFK 240
SDNPAKFAKA IVEATTHFTD YKLIAELSKE LGTAMKGIEI SNLLPEQRMQ ERGW 294 
Gene Ontology
 GO:0016829; F:lyase activity; IEA:UniProtKB-KW.
 GO:0042823; P:pyridoxal phosphate biosynthetic process; IEA:UniProtKB-UniPathway. 
Interpro
 IPR013785; Aldolase_TIM.
 IPR011060; RibuloseP-bd_barrel.
 IPR001852; Snz1p/Sor1. 
Pfam
 PF01680; SOR_SNZ 
SMART
  
PROSITE
 PS01235; PDXS_SNZ_1
 PS51129; PDXS_SNZ_2 
PRINTS