CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-017537
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 WD repeat, SAM and U-box domain-containing protein 1 
Protein Synonyms/Alias
  
Gene Name
 WDSUB1 
Gene Synonyms/Alias
 WDSAM1 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
398EELRTKVKSLSSGIPubiquitination[1]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961
Functional Description
  
Sequence Annotation
 REPEAT 10 47 WD 1.
 REPEAT 52 91 WD 2.
 REPEAT 95 134 WD 3.
 REPEAT 137 176 WD 4.
 REPEAT 178 228 WD 5.
 REPEAT 237 276 WD 6.
 REPEAT 279 318 WD 7.
 DOMAIN 332 396 SAM.
 DOMAIN 403 476 U-box.
 MOD_RES 458 458 Phosphothreonine.  
Keyword
 Alternative splicing; Complete proteome; Phosphoprotein; Polymorphism; Reference proteome; Repeat; WD repeat. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 476 AA 
Protein Sequence
MVKLIHTLAD HGDDVNCCAF SFSLLATCSL DKTIRLYSLR DFTELPHSPL KFHTYAVHCC 60
CFSPSGHILA SCSTDGTTVL WNTENGQMLA VMEQPSGSPV RVCQFSPDST CLASGAADGT 120
VVLWNAQSYK LYRCGSVKDG SLAACAFSPN GSFFVTGSSC GDLTVWDDKM RCPHSEKAHD 180
LGITCCDFSS QPVSDGEQGL QFFRLASCGQ DCQVKIWIVS FTHILGFELK YKSTLSGHCA 240
PVLACAFSHD GQMLVSGSVD KSVIVYDTNT ENILHTLTQH TRYVTTCAFA PNTLLLATGS 300
MDKTVNIWQF DLETLCQARR TEHQLKQFTE DWSEEDVSTW LCAQDLKDLV GIFKMNNIDG 360
KELLNLTKES LADDLKIESL GLRSKVLRKI EELRTKVKSL SSGIPDEFIC PITRELMKDP 420
VIASDGYSYE KEAMENWISK KKRTSPMTNL VLPSAVLTPN RTLKMAINRW LETHQK 476 
Gene Ontology
 GO:0000151; C:ubiquitin ligase complex; IEA:InterPro.
 GO:0004842; F:ubiquitin-protein ligase activity; IEA:InterPro. 
Interpro
 IPR020472; G-protein_beta_WD-40_rep.
 IPR001660; SAM.
 IPR013761; SAM/pointed.
 IPR011510; SAM_2.
 IPR003613; Ubox_domain.
 IPR015943; WD40/YVTN_repeat-like_dom.
 IPR001680; WD40_repeat.
 IPR019775; WD40_repeat_CS.
 IPR017986; WD40_repeat_dom.
 IPR013083; Znf_RING/FYVE/PHD. 
Pfam
 PF07647; SAM_2
 PF04564; U-box
 PF00400; WD40 
SMART
 SM00454; SAM
 SM00504; Ubox
 SM00320; WD40 
PROSITE
 PS50105; SAM_DOMAIN
 PS00678; WD_REPEATS_1
 PS50082; WD_REPEATS_2
 PS50294; WD_REPEATS_REGION 
PRINTS
 PR00320; GPROTEINBRPT.