CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-023956
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Phosphoserine aminotransferase 
Protein Synonyms/Alias
 Phosphohydroxythreonine aminotransferase; PSAT 
Gene Name
 PSAT1 
Gene Synonyms/Alias
 PSA 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
16NFGPGPAKLPHSVLLubiquitination[1, 2, 3, 4]
27SVLLEIQKELLDYKGubiquitination[1, 2, 3, 4, 5, 6, 7]
33QKELLDYKGVGISVLubiquitination[3, 4, 7]
51HRSSDFAKIINNTENacetylation[8]
51HRSSDFAKIINNTENubiquitination[1, 2, 3, 4, 5, 6, 7, 9, 10, 11, 12]
94PLNLIGLKAGRCADYubiquitination[2, 3, 6]
110VTGAWSAKAAEEAKKacetylation[4, 13]
110VTGAWSAKAAEEAKKubiquitination[3]
117KAAEEAKKFGTINIVubiquitination[3, 7]
127TINIVHPKLGSYTKIacetylation[4, 8]
127TINIVHPKLGSYTKIubiquitination[3]
184MSSNFLSKPVDVSKFubiquitination[2, 3, 4, 6]
190SKPVDVSKFGVIFAGubiquitination[1, 3]
269GGAAAMEKLSSIKSQacetylation[8]
269GGAAAMEKLSSIKSQubiquitination[2, 3]
274MEKLSSIKSQTIYEIubiquitination[6]
300VEPQNRSKMNIPFRIubiquitination[3, 4]
311PFRIGNAKGDDALEKacetylation[4]
311PFRIGNAKGDDALEKubiquitination[2, 3, 6, 7]
318KGDDALEKRFLDKALacetylation[4, 8]
318KGDDALEKRFLDKALubiquitination[2, 3, 11]
323LEKRFLDKALELNMLacetylation[8]
323LEKRFLDKALELNMLubiquitination[1, 2, 3, 4, 5, 6, 7, 9, 10, 11, 12, 14]
333ELNMLSLKGHRSVGGacetylation[4, 8]
333ELNMLSLKGHRSVGGubiquitination[1, 2, 3, 4, 6, 7, 11]
356VTIEDVQKLAAFMKKubiquitination[2, 3]
363KLAAFMKKFLEMHQLubiquitination[1, 2, 3]
Reference
 [1] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [2] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [3] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [4] Integrated proteomic analysis of post-translational modifications by serial enrichment.
 Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA.
 Nat Methods. 2013 Jul;10(7):634-7. [PMID: 23749302]
 [5] Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling.
 Xu G, Paige JS, Jaffrey SR.
 Nat Biotechnol. 2010 Aug;28(8):868-73. [PMID: 20639865]
 [6] Global identification of modular cullin-RING ligase substrates.
 Emanuele MJ, Elia AE, Xu Q, Thoma CR, Izhar L, Leng Y, Guo A, Chen YN, Rush J, Hsu PW, Yen HC, Elledge SJ.
 Cell. 2011 Oct 14;147(2):459-74. [PMID: 21963094]
 [7] Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
 Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW.
 Nature. 2013 Apr 18;496(7445):372-6. [PMID: 23503661]
 [8] Lysine acetylation targets protein complexes and co-regulates major cellular functions.
 Choudhary C, Kumar C, Gnad F, Nielsen ML, Rehman M, Walther TC, Olsen JV, Mann M.
 Science. 2009 Aug 14;325(5942):834-40. [PMID: 19608861]
 [9] Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level.
 Danielsen JM, Sylvestersen KB, Bekker-Jensen S, Szklarczyk D, Poulsen JW, Horn H, Jensen LJ, Mailand N, Nielsen ML.
 Mol Cell Proteomics. 2011 Mar;10(3):M110.003590. [PMID: 21139048]
 [10] Proteome-wide identification of ubiquitylation sites by conjugation of engineered lysine-less ubiquitin.
 Oshikawa K, Matsumoto M, Oyamada K, Nakayama KI.
 J Proteome Res. 2012 Feb 3;11(2):796-807. [PMID: 22053931]
 [11] Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition.
 Udeshi ND, Mani DR, Eisenhaure T, Mertins P, Jaffe JD, Clauser KR, Hacohen N, Carr SA.
 Mol Cell Proteomics. 2012 May;11(5):148-59. [PMID: 22505724]
 [12] hCKSAAP_UbSite: improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties.
 Chen Z, Zhou Y, Song J, Zhang Z.
 Biochim Biophys Acta. 2013 Aug;1834(8):1461-7. [PMID: 23603789]
 [13] Proteomic investigations of lysine acetylation identify diverse substrates of mitochondrial deacetylase sirt3.
 Sol EM, Wagner SA, Weinert BT, Kumar A, Kim HS, Deng CX, Choudhary C.
 PLoS One. 2012;7(12):e50545. [PMID: 23236377]
 [14] A data set of human endogenous protein ubiquitination sites.
 Shi Y, Chan DW, Jung SY, Malovannaya A, Wang Y, Qin J.
 Mol Cell Proteomics. 2011 May;10(5):M110.002089. [PMID: 20972266
Functional Description
 Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine (By similarity). 
Sequence Annotation
 REGION 79 80 Pyridoxal phosphate binding (By
 REGION 241 242 Pyridoxal phosphate binding (By
 BINDING 45 45 L-glutamate (By similarity).
 BINDING 107 107 Pyridoxal phosphate (By similarity).
 BINDING 156 156 Pyridoxal phosphate (By similarity).
 BINDING 176 176 Pyridoxal phosphate (By similarity).
 BINDING 199 199 Pyridoxal phosphate (By similarity).
 MOD_RES 1 1 N-acetylmethionine.
 MOD_RES 51 51 N6-acetyllysine.
 MOD_RES 200 200 N6-(pyridoxal phosphate)lysine (By
 MOD_RES 269 269 N6-acetyllysine.
 MOD_RES 318 318 N6-acetyllysine.
 MOD_RES 323 323 N6-acetyllysine.
 MOD_RES 333 333 N6-acetyllysine.  
Keyword
 3D-structure; Acetylation; Alternative splicing; Amino-acid biosynthesis; Aminotransferase; Complete proteome; Disease mutation; Polymorphism; Pyridoxal phosphate; Reference proteome; Serine biosynthesis; Transferase. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 370 AA 
Protein Sequence
MDAPRQVVNF GPGPAKLPHS VLLEIQKELL DYKGVGISVL EMSHRSSDFA KIINNTENLV 60
RELLAVPDNY KVIFLQGGGC GQFSAVPLNL IGLKAGRCAD YVVTGAWSAK AAEEAKKFGT 120
INIVHPKLGS YTKIPDPSTW NLNPDASYVY YCANETVHGV EFDFIPDVKG AVLVCDMSSN 180
FLSKPVDVSK FGVIFAGAQK NVGSAGVTVV IVRDDLLGFA LRECPSVLEY KVQAGNSSLY 240
NTPPCFSIYV MGLVLEWIKN NGGAAAMEKL SSIKSQTIYE IIDNSQGFYV CPVEPQNRSK 300
MNIPFRIGNA KGDDALEKRF LDKALELNML SLKGHRSVGG IRASLYNAVT IEDVQKLAAF 360
MKKFLEMHQL 370 
Gene Ontology
 GO:0005829; C:cytosol; TAS:Reactome.
 GO:0004648; F:O-phospho-L-serine:2-oxoglutarate aminotransferase activity; NAS:UniProtKB.
 GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro.
 GO:0006564; P:L-serine biosynthetic process; NAS:UniProtKB.
 GO:0008615; P:pyridoxine biosynthetic process; NAS:UniProtKB. 
Interpro
 IPR000192; Aminotrans_V/Cys_dSase.
 IPR020578; Aminotrans_V_PyrdxlP_BS.
 IPR022278; Pser_aminoTfrase.
 IPR003248; Pser_aminoTfrase_subgr.
 IPR015424; PyrdxlP-dep_Trfase.
 IPR015421; PyrdxlP-dep_Trfase_major_sub1.
 IPR015422; PyrdxlP-dep_Trfase_major_sub2. 
Pfam
 PF00266; Aminotran_5 
SMART
  
PROSITE
 PS00595; AA_TRANSFER_CLASS_5 
PRINTS