CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-019671
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 ATP-dependent zinc metalloprotease YME1L1 
Protein Synonyms/Alias
 ATP-dependent metalloprotease FtsH1; Meg-4; Presenilin-associated metalloprotease; PAMP; YME1-like protein 1 
Gene Name
 YME1L1 
Gene Synonyms/Alias
 FTSH1; YME1L; UNQ1868/PRO4304 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
180NIAPSFVKGFLLRDRubiquitination[1]
201LDKLMKTKNIPEAHQubiquitination[1]
221GFAEGFLKAQALTQKubiquitination[1]
499LVNQAALKAAVDGKEubiquitination[1]
651MTYSDTGKLSPETQSubiquitination[1]
Reference
 [1] Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
 Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW.
 Nature. 2013 Apr 18;496(7445):372-6. [PMID: 23503661
Functional Description
 Putative ATP-dependent protease which plays a role in mitochondrial protein metabolism. Ensures cell proliferation, maintains normal cristae morphology and complex I respiration activity, promotes antiapoptotic activity and protects mitochondria from the accumulation of oxidatively damaged membrane proteins. Requires to control the accumulation of nonassembled respiratory chain subunits (NDUFB6, OX4 and ND1). Seems to act in the processing of OPA1. 
Sequence Annotation
 NP_BIND 379 386 ATP (Potential).
 ACT_SITE 600 600 By similarity.
 METAL 599 599 Zinc; catalytic (By similarity).
 METAL 603 603 Zinc; catalytic (By similarity).
 METAL 677 677 Zinc; catalytic (By similarity).  
Keyword
 Alternative splicing; ATP-binding; Complete proteome; Hydrolase; Membrane; Metal-binding; Metalloprotease; Mitochondrion; Mitochondrion inner membrane; Nucleotide-binding; Protease; Reference proteome; Transmembrane; Transmembrane helix; Zinc. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 773 AA 
Protein Sequence
MFSLSSTVQP QVTVPLSHLI NAFHTPKNTS VSLSGVSVSQ NQHRDVVPEH EAPSSEPSLN 60
LRDLGLSELK IGQIDQLVEN LLPGFCKGKN ISSHWHTSHV SAQSFFENKY GNLDIFSTLR 120
SSCLYRHHSR ALQSICSDLQ YWPVFIQSRG FKTLKSRTRR LQSTSERLAE TQNIAPSFVK 180
GFLLRDRGSD VESLDKLMKT KNIPEAHQDA FKTGFAEGFL KAQALTQKTN DSLRRTRLIL 240
FVLLLFGIYG LLKNPFLSVR FRTTTGLDSA VDPVQMKNVT FEHVKGVEEA KQELQEVVEF 300
LKNPQKFTIL GGKLPKGILL VGPPGTGKTL LARAVAGEAD VPFYYASGSE FDEMFVGVGA 360
SRIRNLFREA KANAPCVIFI DELDSVGGKR IESPMHPYSR QTINQLLAEM DGFKPNEGVI 420
IIGATNFPEA LDNALIRPGR FDMQVTVPRP DVKGRTEILK WYLNKIKFDQ SVDPEIIARG 480
TVGFSGAELE NLVNQAALKA AVDGKEMVTM KELEFSKDKI LMGPERRSVE IDNKNKTITA 540
YHESGHAIIA YYTKDAMPIN KATIMPRGPT LGHVSLLPEN DRWNETRAQL LAQMDVSMGG 600
RVAEELIFGT DHITTGASSD FDNATKIAKR MVTKFGMSEK LGVMTYSDTG KLSPETQSAI 660
EQEIRILLRD SYERAKHILK THAKEHKNLA EALLTYETLD AKEIQIVLEG KKLEVR 716 
Gene Ontology
 GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
 GO:0005743; C:mitochondrial inner membrane; IDA:UniProtKB.
 GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
 GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
 GO:0004222; F:metalloendopeptidase activity; IEA:InterPro.
 GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
 GO:0008283; P:cell proliferation; IMP:UniProtKB.
 GO:0006515; P:misfolded or incompletely synthesized protein catabolic process; IMP:UniProtKB.
 GO:0007005; P:mitochondrion organization; IMP:UniProtKB. 
Interpro
 IPR003593; AAA+_ATPase.
 IPR003959; ATPase_AAA_core.
 IPR003960; ATPase_AAA_CS.
 IPR005936; FtsH.
 IPR027417; P-loop_NTPase.
 IPR000642; Peptidase_M41. 
Pfam
 PF00004; AAA
 PF01434; Peptidase_M41 
SMART
 SM00382; AAA 
PROSITE
 PS00674; AAA 
PRINTS