CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-005658
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial 
Protein Synonyms/Alias
 Isocitric dehydrogenase; NAD(+)-specific ICDH 
Gene Name
 IDH2 
Gene Synonyms/Alias
 YOR136W; O3326; YOR3326W 
Created Date
 July 27, 2013 
Organism
 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 
NCBI Taxa ID
 559292 
Lysine Modification
Position
Peptide
Type
References
36KPNPSTGKYTVSFIEacetylation[1]
53GIGPEISKSVKKIFSacetylation[1]
100TKNLVALKGPLATPIacetylation[1]
220GLFVNVAKELSKEYPacetylation[1]
Reference
 [1] Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae.
 Henriksen P, Wagner SA, Weinert BT, Sharma S, Bacinskaja G, Rehman M, Juffer AH, Walther TC, Lisby M, Choudhary C.
 Mol Cell Proteomics. 2012 Nov;11(11):1510-22. [PMID: 22865919
Functional Description
 Performs an essential role in the oxidative function of the citric acid cycle. Also binds RNA; specifically to the 5'- untranslated leaders of mitochondrial mRNAs. 
Sequence Annotation
 METAL 237 237 Magnesium or manganese (By similarity).
 METAL 263 263 Magnesium or manganese (By similarity).
 METAL 267 267 Magnesium or manganese (By similarity).
 BINDING 119 119 Substrate (By similarity).
 BINDING 129 129 Substrate (By similarity).
 BINDING 150 150 Substrate (By similarity).
 BINDING 237 237 Substrate (By similarity).
 MOD_RES 105 105 Phosphothreonine.
 MOD_RES 153 153 Phosphothreonine.
 MOD_RES 327 327 Phosphothreonine.
 MOD_RES 349 349 Phosphothreonine.  
Keyword
 3D-structure; Allosteric enzyme; Complete proteome; Direct protein sequencing; Magnesium; Manganese; Metal-binding; Mitochondrion; NAD; Oxidoreductase; Phosphoprotein; Reference proteome; RNA-binding; Transit peptide; Tricarboxylic acid cycle. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 369 AA 
Protein Sequence
MLRNTFFRNT SRRFLATVKQ PSIGRYTGKP NPSTGKYTVS FIEGDGIGPE ISKSVKKIFS 60
AANVPIEWES CDVSPIFVNG LTTIPDPAVQ SITKNLVALK GPLATPIGKG HRSLNLTLRK 120
TFGLFANVRP AKSIEGFKTT YENVDLVLIR ENTEGEYSGI EHIVCPGVVQ SIKLITRDAS 180
ERVIRYAFEY ARAIGRPRVI VVHKSTIQRL ADGLFVNVAK ELSKEYPDLT LETELIDNSV 240
LKVVTNPSAY TDAVSVCPNL YGDILSDLNS GLSAGSLGLT PSANIGHKIS IFEAVHGSAP 300
DIAGQDKANP TALLLSSVMM LNHMGLTNHA DQIQNAVLST IASGPENRTG DLAGTATTSS 360
FTEAVIKRL 369 
Gene Ontology
 GO:0005962; C:mitochondrial isocitrate dehydrogenase complex (NAD+); IDA:SGD.
 GO:0004449; F:isocitrate dehydrogenase (NAD+) activity; IEA:EC.
 GO:0000287; F:magnesium ion binding; IEA:InterPro.
 GO:0051287; F:NAD binding; IEA:InterPro.
 GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
 GO:0006537; P:glutamate biosynthetic process; TAS:SGD.
 GO:0006102; P:isocitrate metabolic process; TAS:SGD.
 GO:0006099; P:tricarboxylic acid cycle; TAS:SGD. 
Interpro
 IPR019818; IsoCit/isopropylmalate_DH_CS.
 IPR001804; Isocitrate/isopropylmalate_DH.
 IPR004434; Isocitrate_DH_NAD.
 IPR024084; IsoPropMal-DH-like_dom. 
Pfam
 PF00180; Iso_dh 
SMART
  
PROSITE
 PS00470; IDH_IMDH 
PRINTS