CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-011326
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Pyruvate carboxylase, mitochondrial 
Protein Synonyms/Alias
 Pyruvic carboxylase; PCB 
Gene Name
 Pc 
Gene Synonyms/Alias
 Pcx 
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
316TVEFLVDKHGKHYFIacetylation[1]
Reference
 [1] Substrate and functional diversity of lysine acetylation revealed by a proteomics survey.
 Kim SC, Sprung R, Chen Y, Xu Y, Ball H, Pei J, Cheng T, Kho Y, Xiao H, Xiao L, Grishin NV, White M, Yang XJ, Zhao Y.
 Mol Cell. 2006 Aug;23(4):607-18. [PMID: 16916647
Functional Description
 Pyruvate carboxylase catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. Catalyzes in a tissue specific manner, the initial reactions of glucose (liver, kidney) and lipid (adipose tissue, liver, brain) synthesis from pyruvate. 
Sequence Annotation
 DOMAIN 36 486 Biotin carboxylation.
 DOMAIN 156 353 ATP-grasp.
 DOMAIN 563 832 Carboxyltransferase.
 DOMAIN 1110 1177 Biotinyl-binding.
 REGION 571 575 Substrate binding (By similarity).
 ACT_SITE 328 328 By similarity.
 METAL 572 572 Manganese (By similarity).
 METAL 741 741 Manganese; via carbamate group (By
 METAL 771 771 Manganese (By similarity).
 METAL 773 773 Manganese (By similarity).
 BINDING 152 152 ATP (By similarity).
 BINDING 236 236 ATP (By similarity).
 BINDING 271 271 ATP (By similarity).
 BINDING 644 644 Substrate (By similarity).
 BINDING 908 908 Substrate (By similarity).
 MOD_RES 316 316 N6-acetyllysine.
 MOD_RES 741 741 N6-carboxylysine (By similarity).
 MOD_RES 1090 1090 N6-acetyllysine (By similarity).
 MOD_RES 1144 1144 N6-biotinyllysine (By similarity).  
Keyword
 Acetylation; ATP-binding; Biotin; Complete proteome; Gluconeogenesis; Ligase; Lipid biosynthesis; Lipid metabolism; Manganese; Metal-binding; Mitochondrion; Multifunctional enzyme; Nucleotide-binding; Pyruvate; Reference proteome; Transit peptide. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 1178 AA 
Protein Sequence
MLKFQTVRGG LRLLGVRRSS SAPVASPNVR RLEYKPIKKV MVANRGEIAI RVFRACTELG 60
IRTVAVYSEQ DTGQMHRQKA DEAYLIGRGL APVQAYLHIP DIIKVAKENG VDAVHPGYGF 120
LSERADFAQA CQDAGVRFIG PSPEVVRKMG DKVEARAIAI AAGVPVVPGT DSPISSLHEA 180
HEFSNTFGFP IIFKAAYGGG GRGMRVVHSY EELEENYTRA YSEALAAFGN GALFVEKFIE 240
KPRHIEVQIL GDQYGNILHL YERDCSIQRR HQKVVEIAPA THLDPQLRSR LTSDSVKLAK 300
QVGYENAGTV EFLVDKHGKH YFIEVNSRLQ VEHTVTEEIT DVDLVHAQIH VSEGRSLPDL 360
GLRQENIRIN GCAIQCRVTT EDPARSFQPD TGRIEVFRSG EGMGIRLDNA SAFQGAVISP 420
HYDSLLVKVI AHGKDHPTAA TKMSRALAEF RVRGVKTNIP FLQNVLNNQQ FLAGTVDTQF 480
IDENPELFQL RPAQNRAQKL LHYLGHVMVN GPTTPIPVNV SPSPVDPAVP VVPIGPPPAG 540
FRDILLREGP EGFARAVRNH QGLLLMDTTF RDAHQSLLAT RVRTHDLKKI APYVAHNFNK 600
LFSMENWGGA TFDVAMRFLY ECPWRRLQEL RELIPNIPFQ MLLRGANAVG YTNYPDNVVF 660
KFCEVAKENG MDVFRVFDSL NYLPNMLLGM EAAGSAGGVV EAAISYTGDV ADPSRTKYSL 720
EYYMGLAEEL VRAGTHILCI KDMAGLLKPA ACTMLVSSLR DRFPDLPLHI HTHDTSGAGV 780
AAMLACAQAG ADVVDVAVDS MSGMTSQPSM GALVACTKGT PLDTEVPLER VFDYSEYWEG 840
ARGLYAAFDC TATMKSGNSD VYENEIPGGQ YTNLHFQAHS MGLGSKFKEV KKAYVEANQM 900
LGDLIKVTPS SKIVGDLAQF MVQNGLSRAE AEAQAEELSF PRSVVEFLQG YIGIPHGGFP 960
EPFRSKVLKD LPRIEGRPGA SLPPLNLKEL EKDLIDRHGE EVTPEDVLSA AMYPDVFAQF 1020
KDFTATFGPL DSLNTRLFLQ GPKIAEEFEV ELERGKTLHI KALAVSDLNR AGQRQVFFEL 1080
NGQLRSILVK DTQAMKEMHF HPKALKDVKG QIGAPMPGKV IDIKVAAGDK VAKGQPLCVL 1140
SAMKMETVVT SPMEGTIRKV HVTKDMTLEG DDLILEIE 1178 
Gene Ontology
 GO:0005743; C:mitochondrial inner membrane; IDA:MGI.
 GO:0005759; C:mitochondrial matrix; IEA:UniProtKB-SubCell.
 GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
 GO:0004075; F:biotin carboxylase activity; IEA:InterPro.
 GO:0003677; F:DNA binding; IEA:InterPro.
 GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
 GO:0004736; F:pyruvate carboxylase activity; IEA:EC.
 GO:0006094; P:gluconeogenesis; IEA:UniProtKB-UniPathway.
 GO:0006629; P:lipid metabolic process; IEA:UniProtKB-KW. 
Interpro
 IPR013785; Aldolase_TIM.
 IPR011761; ATP-grasp.
 IPR013815; ATP_grasp_subdomain_1.
 IPR013816; ATP_grasp_subdomain_2.
 IPR001882; Biotin_BS.
 IPR011764; Biotin_carboxylation_dom.
 IPR005482; Biotin_COase_C.
 IPR000089; Biotin_lipoyl.
 IPR005481; CarbamoylP_synth_lsu_N.
 IPR003379; Carboxylase_cons_dom.
 IPR005479; CbamoylP_synth_lsu-like_ATP-bd.
 IPR009057; Homeodomain-like.
 IPR016185; PreATP-grasp_dom.
 IPR000891; PYR_CT.
 IPR005930; Pyruv_COase.
 IPR011054; Rudment_hybrid_motif.
 IPR011053; Single_hybrid_motif. 
Pfam
 PF02785; Biotin_carb_C
 PF00364; Biotin_lipoyl
 PF00289; CPSase_L_chain
 PF02786; CPSase_L_D2
 PF00682; HMGL-like
 PF02436; PYC_OADA 
SMART
 SM00878; Biotin_carb_C 
PROSITE
 PS50975; ATP_GRASP
 PS50979; BC
 PS00188; BIOTIN
 PS50968; BIOTINYL_LIPOYL
 PS50989; COA_CT_CTER
 PS50980; COA_CT_NTER
 PS50991; PYR_CT 
PRINTS