CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-006057
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Oxygen-independent coproporphyrinogen-III oxidase 
Protein Synonyms/Alias
 Coprogen oxidase; Coproporphyrinogenase 
Gene Name
 hemN 
Gene Synonyms/Alias
 yihJ; b3867; JW3838 
Created Date
 July 27, 2013 
Organism
 Escherichia coli (strain K12) 
NCBI Taxa ID
 83333 
Lysine Modification
Position
Peptide
Type
References
81IVTRQQHKADQYLDAacetylation[1]
120GTPTYLNKAQISRLMacetylation[1]
227ESFAFTLKRVAELNPacetylation[1]
256FAAQRKIKDADLPSPacetylation[1]
344AQNQKELKQYYQQVDacetylation[1]
412KLLAPLAKDGLVDVDacetylation[1]
421GLVDVDEKGIQVTAKacetylation[1]
Reference
 [1] Acetyl-Phosphate Is a Critical Determinant of Lysine Acetylation in E. coli.
 Weinert BT, Iesmantavicius V, Wagner SA, Schölz C, Gummesson B, Beli P, Nyström T, Choudhary C.
 Mol Cell. 2013 Jul 25;51(2):265-72. [PMID: 23830618
Functional Description
 Anaerobic transformation of coproporphyrinogen-III into protoporphyrinogen-IX. 
Sequence Annotation
 REGION 113 114 S-adenosyl-L-methionine 2 binding.
 METAL 62 62 Iron-sulfur (4Fe-4S-S-AdoMet).
 METAL 66 66 Iron-sulfur (4Fe-4S-S-AdoMet).
 METAL 69 69 Iron-sulfur (4Fe-4S-S-AdoMet).
 BINDING 56 56 S-adenosyl-L-methionine 1.
 BINDING 68 68 S-adenosyl-L-methionine 2; via carbonyl
 BINDING 112 112 S-adenosyl-L-methionine 1; via amide
 BINDING 145 145 S-adenosyl-L-methionine 1.
 BINDING 172 172 S-adenosyl-L-methionine 2.
 BINDING 184 184 S-adenosyl-L-methionine 2.
 BINDING 209 209 S-adenosyl-L-methionine 2.  
Keyword
 3D-structure; 4Fe-4S; Complete proteome; Cytoplasm; Iron; Iron-sulfur; Metal-binding; Oxidoreductase; Porphyrin biosynthesis; Reference proteome; S-adenosyl-L-methionine. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 457 AA 
Protein Sequence
MSVQQIDWDL ALIQKYNYSG PRYTSYPTAL EFSEDFGEQA FLQAVARYPE RPLSLYVHIP 60
FCHKLCYFCG CNKIVTRQQH KADQYLDALE QEIVHRAPLF AGRHVSQLHW GGGTPTYLNK 120
AQISRLMKLL RENFQFNADA EISIEVDPRE IELDVLDHLR AEGFNRLSMG VQDFNKEVQR 180
LVNREQDEEF IFALLNHARE IGFTSTNIDL IYGLPKQTPE SFAFTLKRVA ELNPDRLSVF 240
NYAHLPTIFA AQRKIKDADL PSPQQKLDIL QETIAFLTQS GYQFIGMDHF ARPDDELAVA 300
QREGVLHRNF QGYTTQGDTD LLGMGVSAIS MIGDCYAQNQ KELKQYYQQV DEQGNALWRG 360
IALTRDDCIR RDVIKSLICN FRLDYAPIEK QWDLHFADYF AEDLKLLAPL AKDGLVDVDE 420
KGIQVTAKGR LLIRNICMCF DTYLRQKARM QQFSRVI 457 
Gene Ontology
 GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
 GO:0051539; F:4 iron, 4 sulfur cluster binding; IDA:EcoCyc.
 GO:0051989; F:coproporphyrinogen dehydrogenase activity; IDA:EcoCyc.
 GO:0004109; F:coproporphyrinogen oxidase activity; IEA:InterPro.
 GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
 GO:0019353; P:protoporphyrinogen IX biosynthetic process from glutamate; IGI:EcoCyc. 
Interpro
 IPR004558; Coprogen_oxidase_HemN.
 IPR006638; Elp3/MiaB/NifB.
 IPR010723; HemN_C_dom.
 IPR007197; rSAM.
 IPR023404; rSAM_horseshoe. 
Pfam
 PF06969; HemN_C
 PF04055; Radical_SAM 
SMART
 SM00729; Elp3 
PROSITE
  
PRINTS