CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-006235
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Syntaxin PEP12 
Protein Synonyms/Alias
 Carboxypeptidase Y-deficient protein 12; Vacuolar protein sorting-associated protein 6; Vacuolar protein-targeting protein 13 
Gene Name
 PEP12 
Gene Synonyms/Alias
 VPS6; VPT13; YOR036W; OR26.29 
Created Date
 July 27, 2013 
Organism
 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 
NCBI Taxa ID
 559292 
Lysine Modification
Position
Peptide
Type
References
145KQVNERAKESLEASEubiquitination[1]
220TELNEVFKDLGSVVQubiquitination[2]
Reference
 [1] Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation.
 Swaney DL, Beltrao P, Starita L, Guo A, Rush J, Fields S, Krogan NJ, VillĂ©n J.
 Nat Methods. 2013 Jul;10(7):676-82. [PMID: 23749301]
 [2] Identification, analysis, and prediction of protein ubiquitination sites.
 Radivojac P, Vacic V, Haynes C, Cocklin RR, Mohan A, Heyen JW, Goebl MG, Iakoucheva LM.
 Proteins. 2010 Feb 1;78(2):365-80. [PMID: 19722269
Functional Description
 Plays a role in the sorting and targeting of vacuolar proteases. 
Sequence Annotation
 DOMAIN 195 257 t-SNARE coiled-coil homology.
 MOD_RES 2 2 Phosphoserine.
 MOD_RES 23 23 Phosphoserine.  
Keyword
 Coiled coil; Complete proteome; Membrane; Phosphoprotein; Reference proteome; Transmembrane; Transmembrane helix; Ubl conjugation. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 288 AA 
Protein Sequence
MSEDEFFGGD NEAVWNGSRF SDSPEFQTLK EEVAAELFEI NGQISTLQQF TATLKSFIDR 60
GDVSAKVVER INKRSVAKIE EIGGLIKKVN TSVKKMDAIE EASLDKTQII AREKLVRDVS 120
YSFQEFQGIQ RQFTQVMKQV NERAKESLEA SEMANDAALL DEEQRQNSSK STRIPGSQIV 180
IERDPINNEE FAYQQNLIEQ RDQEISNIER GITELNEVFK DLGSVVQQQG VLVDNIEANI 240
YTTSDNTQLA SDELRKAMRY QKRTSRWRVY LLIVLLVMLL FIFLIMKL 288 
Gene Ontology
 GO:0005768; C:endosome; IMP:SGD.
 GO:0005794; C:Golgi apparatus; IMP:SGD.
 GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
 GO:0005484; F:SNAP receptor activity; IDA:SGD.
 GO:0006896; P:Golgi to vacuole transport; IMP:SGD.
 GO:0006886; P:intracellular protein transport; IEA:InterPro.
 GO:0000011; P:vacuole inheritance; IMP:SGD. 
Interpro
 IPR006012; Syntaxin/epimorphin_CS.
 IPR006011; Syntaxin_N.
 IPR010989; t-SNARE.
 IPR000727; T_SNARE_dom. 
Pfam
 PF05739; SNARE 
SMART
 SM00503; SynN
 SM00397; t_SNARE 
PROSITE
 PS00914; SYNTAXIN
 PS50192; T_SNARE 
PRINTS