CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-005978
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Cystathionine gamma-lyase 
Protein Synonyms/Alias
 Gamma-cystathionase; Sulfur transfer protein 1 
Gene Name
 CYS3 
Gene Synonyms/Alias
 CYI1; STR1; YAL012W; FUN35 
Created Date
 July 27, 2013 
Organism
 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 
NCBI Taxa ID
 559292 
Lysine Modification
Position
Peptide
Type
References
113GTHRYFTKVANAHGVubiquitination[1]
160LKVTDIQKVADLIKKacetylation[2]
267QAALSANKIAEFLAAacetylation[2]
288AVNYPGLKTHPNYDVacetylation[2]
298PNYDVVLKQHRDALGacetylation[2]
322GGAEAASKFASSTRLacetylation[2]
356MTHGGIPKEAREASGubiquitination[1]
390EDIKQALKQATN***ubiquitination[1]
Reference
 [1] Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation.
 Swaney DL, Beltrao P, Starita L, Guo A, Rush J, Fields S, Krogan NJ, VillĂ©n J.
 Nat Methods. 2013 Jul;10(7):676-82. [PMID: 23749301]
 [2] Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae.
 Henriksen P, Wagner SA, Weinert BT, Sharma S, Bacinskaja G, Rehman M, Juffer AH, Walther TC, Lisby M, Choudhary C.
 Mol Cell Proteomics. 2012 Nov;11(11):1510-22. [PMID: 22865919
Functional Description
  
Sequence Annotation
 BINDING 52 52 Substrate (By similarity).
 BINDING 104 104 Substrate (By similarity).
 BINDING 109 109 Substrate (By similarity).
 BINDING 334 334 Substrate (By similarity).
 MOD_RES 204 204 N6-(pyridoxal phosphate)lysine (By
 MOD_RES 362 362 Phosphoserine.  
Keyword
 3D-structure; Amino-acid biosynthesis; Complete proteome; Cysteine biosynthesis; Cytoplasm; Direct protein sequencing; Lyase; Phosphoprotein; Pyridoxal phosphate; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 394 AA 
Protein Sequence
MTLQESDKFA TKAIHAGEHV DVHGSVIEPI SLSTTFKQSS PANPIGTYEY SRSQNPNREN 60
LERAVAALEN AQYGLAFSSG SATTATILQS LPQGSHAVSI GDVYGGTHRY FTKVANAHGV 120
ETSFTNDLLN DLPQLIKENT KLVWIETPTN PTLKVTDIQK VADLIKKHAA GQDVILVVDN 180
TFLSPYISNP LNFGADIVVH SATKYINGHS DVVLGVLATN NKPLYERLQF LQNAIGAIPS 240
PFDAWLTHRG LKTLHLRVRQ AALSANKIAE FLAADKENVV AVNYPGLKTH PNYDVVLKQH 300
RDALGGGMIS FRIKGGAEAA SKFASSTRLF TLAESLGGIE SLLEVPAVMT HGGIPKEARE 360
ASGVFDDLVR ISVGIEDTDD LLEDIKQALK QATN 394 
Gene Ontology
 GO:0005737; C:cytoplasm; IDA:SGD.
 GO:0005634; C:nucleus; IDA:SGD.
 GO:0004123; F:cystathionine gamma-lyase activity; IDA:SGD.
 GO:0080146; F:L-cysteine desulfhydrase activity; IEA:EC.
 GO:0044540; F:L-cystine L-cysteine-lyase (deaminating); IEA:EC.
 GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro.
 GO:0019343; P:cysteine biosynthetic process via cystathionine; IMP:SGD.
 GO:0019346; P:transsulfuration; IMP:SGD. 
Interpro
 IPR000277; Cys/Met-Metab_PyrdxlP-dep_enz.
 IPR015424; PyrdxlP-dep_Trfase.
 IPR015421; PyrdxlP-dep_Trfase_major_sub1.
 IPR015422; PyrdxlP-dep_Trfase_major_sub2. 
Pfam
 PF01053; Cys_Met_Meta_PP 
SMART
  
PROSITE
 PS00868; CYS_MET_METAB_PP 
PRINTS