CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-000134
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Ribulose bisphosphate carboxylase large chain 
Protein Synonyms/Alias
 RuBisCO large subunit 
Gene Name
 rbcL 
Gene Synonyms/Alias
 AtCg00490 
Created Date
 July 27, 2013 
Organism
 Arabidopsis thaliana (Mouse-ear cress) 
NCBI Taxa ID
 3702 
Lysine Modification
Position
Peptide
Type
References
14TKASVGFKAGVKEYKacetylation[1]
18VGFKAGVKEYKLTYYacetylation[1]
21KAGVKEYKLTYYTPEacetylation[1]
146RIPPAYTKTFQGPPHacetylation[1]
175PLLGCTIKPKLGLSAacetylation[1]
252GTCEEMIKRAVFAREacetylation[2]
316MHFRVLAKALRLSGGacetylation[1]
356LRDDYVEKDRSRGIFacetylation[1]
463AAACEVWKEITFNFPacetylation[1]
Reference
 [1] Proteins of diverse function and subcellular location are lysine acetylated in Arabidopsis.
 Finkemeier I, Laxa M, Miguet L, Howden AJ, Sweetlove LJ.
 Plant Physiol. 2011 Apr;155(4):1779-90. [PMID: 21311031]
 [2] Lysine acetylation is a widespread protein modification for diverse proteins in Arabidopsis.
 Wu X, Oh MH, Schwarz EM, Larue CT, Sivaguru M, Imai BS, Yau PM, Ort DR, Huber SC.
 Plant Physiol. 2011 Apr;155(4):1769-78. [PMID: 21311030
Functional Description
 RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site (By similarity). 
Sequence Annotation
 ACT_SITE 175 175 Proton acceptor (By similarity).
 ACT_SITE 294 294 Proton acceptor (By similarity).
 METAL 201 201 Magnesium; via carbamate group (By
 METAL 203 203 Magnesium (By similarity).
 METAL 204 204 Magnesium (By similarity).
 BINDING 123 123 Substrate; in homodimeric partner (By
 BINDING 173 173 Substrate (By similarity).
 BINDING 177 177 Substrate (By similarity).
 BINDING 295 295 Substrate (By similarity).
 BINDING 327 327 Substrate (By similarity).
 BINDING 379 379 Substrate (By similarity).
 MOD_RES 3 3 N-acetylproline (By similarity).
 MOD_RES 14 14 N6,N6,N6-trimethyllysine (By similarity).
 MOD_RES 147 147 Phosphothreonine.
 MOD_RES 201 201 N6-carboxylysine (By similarity).
 MOD_RES 330 330 Phosphothreonine.
 DISULFID 247 247 Interchain; in linked form (By  
Keyword
 Acetylation; Calvin cycle; Carbon dioxide fixation; Chloroplast; Complete proteome; Disulfide bond; Lyase; Magnesium; Metal-binding; Methylation; Monooxygenase; Oxidoreductase; Phosphoprotein; Photorespiration; Photosynthesis; Plastid; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 479 AA 
Protein Sequence
MSPQTETKAS VGFKAGVKEY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE 60
SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV PGEETQFIAY VAYPLDLFEE GSVTNMFTSI 120
VGNVFGFKAL AALRLEDLRI PPAYTKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL 180
SAKNYGRAVY ECLRGGLDFT KDDENVNSQP FMRWRDRFLF CAEAIYKSQA ETGEIKGHYL 240
NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL SHYCRDNGLL LHIHRAMHAV 300
IDRQKNHGMH FRVLAKALRL SGGDHIHAGT VVGKLEGDRE STLGFVDLLR DDYVEKDRSR 360
GIFFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL QFGGGTLGHP WGNAPGAVAN 420
RVALEACVQA RNEGRDLAVE GNEIIREACK WSPELAAACE VWKEITFNFP TIDKLDGQE 479 
Gene Ontology
 GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
 GO:0000287; F:magnesium ion binding; IEA:HAMAP.
 GO:0004497; F:monooxygenase activity; IEA:UniProtKB-KW.
 GO:0016984; F:ribulose-bisphosphate carboxylase activity; IEA:HAMAP.
 GO:0009853; P:photorespiration; IEA:UniProtKB-KW.
 GO:0019253; P:reductive pentose-phosphate cycle; IEA:UniProtKB-KW. 
Interpro
 IPR020878; RuBisCo_large_chain_AS.
 IPR020888; RuBisCO_lsu.
 IPR000685; RuBisCO_lsu_C.
 IPR017443; RuBisCO_lsu_fd_N.
 IPR017444; RuBisCO_lsu_N. 
Pfam
 PF00016; RuBisCO_large
 PF02788; RuBisCO_large_N 
SMART
  
PROSITE
 PS00157; RUBISCO_LARGE 
PRINTS