CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-032110
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 S1 RNA-binding domain-containing protein 1 
Protein Synonyms/Alias
 cDNA FLJ57207 
Gene Name
 SRBD1 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
66MGVDPGYKHGCKLAIubiquitination[1]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961] 
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 514 AA 
Protein Sequence
MKILYNSLND SFKRLIYPLL CREFRAKLTS DAEKESVMMF GRNLRQLLLT SPVPGRTLMG 60
VDPGYKHGCK LAIISPTSQI LHTDVVYLHC GQGFREAEKI KTLLLNFNCS TVVIGNGTAC 120
RETEAYFADL IMKNYFAPLD VVYCIVSEAG ASIYSVSPEA NKEMPGLDPN LRSAVSIARR 180
VQDPLAELVK IEPKHIGVGM YQHDVSQTLL KATLDSVVEE CVSFVGVDIN ICSEVLLRHI 240
AGLNANRAKN IIEWREKNGP FINREQLKKV KGLGPKSFQQ CAGFIRINQD YIRTFCSQQT 300
ETSGQIQGVA VTSSADVEVT NEKQGKKKSK TAVNVLLKPN PLDQTCIHPE SYDIAMRFLS 360
SIGGTLYEVG KPEMQQKINS FLEKEGMEKI AERLQTTVHT LQVIIDGLSQ PESFDFRTDF 420
DKPDFKRSIV CLEDLQIGTV LTGKVENATL FGIFVDIGVG KSGLIPIRNV TEAKLSKTKK 480
RRSLGLGPGE RVEVQVLNID IPRSRITLDL IRVL 514 
Gene Ontology
 GO:0016788; F:hydrolase activity, acting on ester bonds; IEA:InterPro.
 GO:0003723; F:RNA binding; IEA:InterPro.
 GO:0006139; P:nucleobase-containing compound metabolic process; IEA:InterPro. 
Interpro
 IPR012340; NA-bd_OB-fold.
 IPR003029; Rbsml_prot_S1_RNA-bd_dom.
 IPR022967; RNA-binding_domain_S1.
 IPR023323; Tex-like_dom.
 IPR023097; Tex_RuvX-like_dom.
 IPR006641; YqgF/RNaseH-like_dom. 
Pfam
 PF00575; S1 
SMART
 SM00316; S1
 SM00732; YqgFc 
PROSITE
 PS50126; S1 
PRINTS