CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-005351
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 DNA replication licensing factor MCM3 
Protein Synonyms/Alias
 DNA polymerase alpha holoenzyme-associated protein P1; P1-MCM3; RLF subunit beta; p102 
Gene Name
 MCM3 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
35DQGIYQSKVRELISDubiquitination[1, 2, 3]
81VAFQRALKDFVASIDubiquitination[2]
140KCSLVRPKVVRSVHYubiquitination[2]
177SSSVYPTKDEENNPLubiquitination[1]
207TIQEMPEKAPAGQLPubiquitination[1]
228LDDDLVDKAKPGDRVubiquitination[2]
230DDLVDKAKPGDRVQVubiquitination[2]
248YRCLPGKKGGYTSGTubiquitination[2]
266VLIACNVKQMSKDAQubiquitination[2, 4]
270CNVKQMSKDAQPSFSubiquitination[2]
293KFSKTRSKDIFDQLAubiquitination[2, 4]
301DIFDQLAKSLAPSIHubiquitination[4]
315HGHDYVKKAILCLLLubiquitination[2]
351IGDPSVAKSQLLRYVubiquitination[1, 4, 5, 6]
413VCIDEFDKMSDMDRTubiquitination[2]
435QGRVTIAKAGIHARLubiquitination[2, 3, 4, 6]
463YGRYDQYKTPMENIGubiquitination[1, 2, 3]
569MVSAAFMKKYIHVAKacetylation[7]
570VSAAFMKKYIHVAKIubiquitination[2]
579IHVAKIIKPVLTQESubiquitination[4]
732TADSQETKESQKVELubiquitination[1, 2]
736QETKESQKVELSESRubiquitination[2]
748ESRLKAFKVALLDVFubiquitination[4]
Reference
 [1] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [2] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [3] Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
 Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW.
 Nature. 2013 Apr 18;496(7445):372-6. [PMID: 23503661]
 [4] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [5] Ubiquitin ligase substrate identification through quantitative proteomics at both the protein and peptide levels.
 Lee KA, Hammerle LP, Andrews PS, Stokes MP, Mustelin T, Silva JC, Black RA, Doedens JR.
 J Biol Chem. 2011 Dec 2;286(48):41530-8. [PMID: 21987572]
 [6] Proteome-wide identification of ubiquitylation sites by conjugation of engineered lysine-less ubiquitin.
 Oshikawa K, Matsumoto M, Oyamada K, Nakayama KI.
 J Proteome Res. 2012 Feb 3;11(2):796-807. [PMID: 22053931]
 [7] Lysine acetylation targets protein complexes and co-regulates major cellular functions.
 Choudhary C, Kumar C, Gnad F, Nielsen ML, Rehman M, Walther TC, Olsen JV, Mann M.
 Science. 2009 Aug 14;325(5942):834-40. [PMID: 19608861
Functional Description
 Acts as component of the MCM2-7 complex (MCM complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the MCM2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity. Required for DNA replication and cell proliferation. 
Sequence Annotation
 DOMAIN 295 502 MCM.
 NP_BIND 345 352 ATP (Potential).
 MOTIF 477 480 Arginine finger.
 MOD_RES 2 2 N-acetylalanine.
 MOD_RES 160 160 Phosphoserine.
 MOD_RES 535 535 Phosphoserine; by ATM.
 MOD_RES 668 668 Phosphoserine.
 MOD_RES 672 672 Phosphoserine.
 MOD_RES 674 674 Phosphothreonine.
 MOD_RES 681 681 Phosphoserine.
 MOD_RES 708 708 Phosphotyrosine.
 MOD_RES 711 711 Phosphoserine.
 MOD_RES 713 713 Phosphothreonine.
 MOD_RES 722 722 Phosphothreonine.
 MOD_RES 725 725 Phosphothreonine.  
Keyword
 Acetylation; ATP-binding; Cell cycle; Complete proteome; Direct protein sequencing; DNA replication; DNA-binding; Glycoprotein; Helicase; Hydrolase; Nucleotide-binding; Nucleus; Phosphoprotein; Polymorphism; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 808 AA 
Protein Sequence
MAGTVVLDDV ELREAQRDYL DFLDDEEDQG IYQSKVRELI SDNQYRLIVN VNDLRRKNEK 60
RANRLLNNAF EELVAFQRAL KDFVASIDAT YAKQYEEFYV GLEGSFGSKH VSPRTLTSCF 120
LSCVVCVEGI VTKCSLVRPK VVRSVHYCPA TKKTIERRYS DLTTLVAFPS SSVYPTKDEE 180
NNPLETEYGL SVYKDHQTIT IQEMPEKAPA GQLPRSVDVI LDDDLVDKAK PGDRVQVVGT 240
YRCLPGKKGG YTSGTFRTVL IACNVKQMSK DAQPSFSAED IAKIKKFSKT RSKDIFDQLA 300
KSLAPSIHGH DYVKKAILCL LLGGVERDLE NGSHIRGDIN ILLIGDPSVA KSQLLRYVLC 360
TAPRAIPTTG RGSSGVGLTA AVTTDQETGE RRLEAGAMVL ADRGVVCIDE FDKMSDMDRT 420
AIHEVMEQGR VTIAKAGIHA RLNARCSVLA AANPVYGRYD QYKTPMENIG LQDSLLSRFD 480
LLFIMLDQMD PEQDREISDH VLRMHRYRAP GEQDGDAMPL GSAVDILATD DPNFSQEDQQ 540
DTQIYEKHDN LLHGTKKKKE KMVSAAFMKK YIHVAKIIKP VLTQESATYI AEEYSRLRSQ 600
DSMSSDTART SPVTARTLET LIRLATAHAK ARMSKTVDLQ DAEEAVELVQ YAYFKKVLEK 660
EKKRKKRSED ESETEDEEEK SQEDQEQKRK RRKTRQPDAK DGDSYDPYDF SDTEEEMPQV 720
HTPKTADSQE TKESQKVELS ESRLKAFKVA LLDVFREAHA QSIGMNRLTE SINRDSEEPF 780
SSVEIQAALS KMQDDNQVMV SEGIIFLI 808 
Gene Ontology
 GO:0005658; C:alpha DNA polymerase:primase complex; TAS:ProtInc.
 GO:0005813; C:centrosome; IDA:HPA.
 GO:0042555; C:MCM complex; IDA:UniProtKB.
 GO:0005654; C:nucleoplasm; TAS:Reactome.
 GO:0048471; C:perinuclear region of cytoplasm; IDA:BHF-UCL.
 GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
 GO:0003677; F:DNA binding; TAS:ProtInc.
 GO:0003678; F:DNA helicase activity; IEA:InterPro.
 GO:0032508; P:DNA duplex unwinding; IEA:GOC.
 GO:0006270; P:DNA replication initiation; TAS:ProtInc.
 GO:0006271; P:DNA strand elongation involved in DNA replication; TAS:Reactome.
 GO:0000082; P:G1/S transition of mitotic cell cycle; TAS:Reactome. 
Interpro
 IPR003593; AAA+_ATPase.
 IPR008046; Mcm3.
 IPR018525; MCM_CS.
 IPR001208; MCM_DNA-dep_ATPase.
 IPR012340; NA-bd_OB-fold.
 IPR027417; P-loop_NTPase. 
Pfam
 PF00493; MCM 
SMART
 SM00382; AAA
 SM00350; MCM 
PROSITE
 PS00847; MCM_1
 PS50051; MCM_2 
PRINTS
 PR01657; MCMFAMILY.
 PR01659; MCMPROTEIN3.