CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-004858
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Ras-related protein Rab-6A 
Protein Synonyms/Alias
 Rab-6 
Gene Name
 RAB6A 
Gene Synonyms/Alias
 RAB6 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
26LGEQSVGKTSLITRFubiquitination[1]
127IIMLVGNKTDLADKRubiquitination[1]
164AKAGYNVKQLFRRVAubiquitination[1, 2]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [2] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473
Functional Description
 Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER). Has a low GTPase activity. 
Sequence Annotation
 NP_BIND 20 28 GTP.
 NP_BIND 68 72 GTP.
 NP_BIND 126 129 GTP.
 NP_BIND 156 158 GTP.
 MOTIF 42 50 Effector region (By similarity).
 MOD_RES 2 2 N-acetylserine.
 MOD_RES 82 82 O-AMP-tyrosine; by Legionella DrrA.
 MOD_RES 180 180 Phosphothreonine (By similarity).
 MOD_RES 208 208 Cysteine methyl ester (By similarity).
 LIPID 206 206 S-geranylgeranyl cysteine (By
 LIPID 208 208 S-geranylgeranyl cysteine (By  
Keyword
 3D-structure; Acetylation; Alternative splicing; Complete proteome; Direct protein sequencing; ER-Golgi transport; Golgi apparatus; GTP-binding; Lipoprotein; Membrane; Methylation; Nucleotide-binding; Phosphoprotein; Prenylation; Protein transport; Reference proteome; Transport. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 208 AA 
Protein Sequence
MSTGGDFGNP LRKFKLVFLG EQSVGKTSLI TRFMYDSFDN TYQATIGIDF LSKTMYLEDR 60
TVRLQLWDTA GQERFRSLIP SYIRDSTVAV VVYDITNVNS FQQTTKWIDD VRTERGSDVI 120
IMLVGNKTDL ADKRQVSIEE GERKAKELNV MFIETSAKAG YNVKQLFRRV AAALPGMEST 180
QDRSREDMID IKLEKPQEQP VSEGGCSC 208 
Gene Ontology
 GO:0031410; C:cytoplasmic vesicle; IDA:BHF-UCL.
 GO:0005829; C:cytosol; IDA:BHF-UCL.
 GO:0005794; C:Golgi apparatus; IDA:UniProtKB.
 GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.
 GO:0016020; C:membrane; IDA:BHF-UCL.
 GO:0005802; C:trans-Golgi network; IDA:BHF-UCL.
 GO:0005525; F:GTP binding; IDA:UniProtKB.
 GO:0003924; F:GTPase activity; IDA:UniProtKB.
 GO:0072385; P:minus-end-directed organelle transport along microtubule; TAS:BHF-UCL.
 GO:0018125; P:peptidyl-cysteine methylation; IDA:MGI.
 GO:0000042; P:protein targeting to Golgi; IDA:UniProtKB.
 GO:0006890; P:retrograde vesicle-mediated transport, Golgi to ER; TAS:BHF-UCL.
 GO:0007264; P:small GTPase mediated signal transduction; IEA:InterPro. 
Interpro
 IPR027417; P-loop_NTPase.
 IPR005225; Small_GTP-bd_dom.
 IPR001806; Small_GTPase.
 IPR003579; Small_GTPase_Rab_type. 
Pfam
 PF00071; Ras 
SMART
 SM00175; RAB 
PROSITE
 PS51419; RAB 
PRINTS
 PR00449; RASTRNSFRMNG.