CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-037311
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 PHD finger protein 6 
Protein Synonyms/Alias
  
Gene Name
 PHF6 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
8MSSSVEQKKGPTRQRubiquitination[1]
38LLISENQKVAAHHKCubiquitination[1]
112YHCALHDKAQIREKPubiquitination[1]
118DKAQIREKPSQGIYMubiquitination[1]
174RPRKTNFKGLSEDTRubiquitination[1]
228EENEARGKLHIFNAKubiquitination[1]
267EFGDFDIKTVLQEIKubiquitination[1]
274KTVLQEIKRGKRMKCubiquitination[1]
280IKRGKRMKCTLCSQPubiquitination[1]
311YHCGVQDKAKYIENMubiquitination[1]
313CGVQDKAKYIENMSRubiquitination[1]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961] 
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 366 AA 
Protein Sequence
MSSSVEQKKG PTRQRKCGFC KSNRDKECGQ LLISENQKVA AHHKCMLFSS ALVSSHSDNE 60
SLGGFSIEDV QKEIKRGTKL MCSLCHCPGA TIGCDVKTCH RTYHYHCALH DKAQIREKPS 120
QGIYMVYCRK HKKTAHNSEA ADLEESFNEH ELEPSSPKSK KKSRKGRPRK TNFKGLSEDT 180
RSTSSHGTDE MESSSYRDRS PHRSSPSDTR PKCGFCHVGE EENEARGKLH IFNAKKAAAH 240
YKCMLFSSGT VQLTTTSRAE FGDFDIKTVL QEIKRGKRMK CTLCSQPGAT IGCEIKACVK 300
TYHYHCGVQD KAKYIENMSR GIYKLYCKNH SGNDERDEED EERESKSRGK VEIDQQQLTQ 360
QQLNGN 366 
Gene Ontology
 GO:0005730; C:nucleolus; IDA:HPA.
 GO:0008270; F:zinc ion binding; IEA:InterPro. 
Interpro
 IPR001965; Znf_PHD. 
Pfam
  
SMART
 SM00249; PHD 
PROSITE
  
PRINTS