CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-029890
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Death effector domain containing, isoform CRA_b 
Protein Synonyms/Alias
 Death effector domain-containing protein 
Gene Name
 DEDD 
Gene Synonyms/Alias
 hCG_20845 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
116VCPDLVDKYLEETSIubiquitination[1]
267NQANTILKSRDLGSIubiquitination[2, 3]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [2] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [3] hCKSAAP_UbSite: improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties.
 Chen Z, Zhou Y, Song J, Zhang Z.
 Biochim Biophys Acta. 2013 Aug;1834(8):1461-7. [PMID: 23603789
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 348 AA 
Protein Sequence
MAGLKRRASQ VWPEEHGEQE HGLYSLHRMF DIVGTHLTHR DVRVLSFLFV DVIDDHERGL 60
IRNGRDFLLA LERQGRCDES NFRQVLQLLR IITRHDLLPY VTLKRRRAVC PDLVDKYLEE 120
TSIRYVTPRA LSDPEPRPPQ PSKTVPPHYP VVCCPTSGPQ MCSKRPARGR ATLGSQRKRR 180
KSVTPDPKEK QTCGEEVQGF QRWSRLEGEY KELLGHWAVY AIQYIRLRVR AEYCQHETAL 240
QGNVFSNKQD PLERQFERFN QANTILKSRD LGSIICDIKF SELTYLDAFW RDYINGSLLE 300
ALKGVFITDS LKQAVGHEAI KLLVNVDEED YELGRQKLLR NLMLQALP 348 
Gene Ontology
 GO:0042981; P:regulation of apoptotic process; IEA:InterPro. 
Interpro
 IPR011029; DEATH-like_dom.
 IPR001875; DED. 
Pfam
 PF01335; DED 
SMART
 SM00031; DED 
PROSITE
 PS50168; DED 
PRINTS