CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-026309
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 Protein LSM14 homolog B 
Protein Synonyms/Alias
  
Gene Name
 LSM14B 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
13GTPYLGSKISLISKAubiquitination[1, 2]
19SKISLISKAQIRYEGubiquitination[2]
42NSTVALAKVRSFGTEubiquitination[2, 3]
Reference
 [1] Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition.
 Udeshi ND, Mani DR, Eisenhaure T, Mertins P, Jaffe JD, Clauser KR, Hacohen N, Carr SA.
 Mol Cell Proteomics. 2012 May;11(5):148-59. [PMID: 22505724]
 [2] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [3] Proteome-wide identification of ubiquitylation sites by conjugation of engineered lysine-less ubiquitin.
 Oshikawa K, Matsumoto M, Oyamada K, Nakayama KI.
 J Proteome Res. 2012 Feb 3;11(2):796-807. [PMID: 22053931
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 296 AA 
Protein Sequence
MSGSSGTPYL GSKISLISKA QIRYEGILYT IDTDNSTVAL AKVRSFGTED RPTDRPAPPR 60
EEIYEYIIFR GSDIKDITVC EPPKAQHTLP QDPAIVQLNK RPDEGVRGDG MAFAVLTRCL 120
VVQSSLGSAS ASPFQPHVPY SPFRGMAPYG PLAASSLLSQ QYAASLGLGA GFPSIPVGKS 180
PMVEQAVQTG SADNLNAKKL LPGKGTTGTQ LNGRQAQPSS KTASDVVQPA AVQAQGQVND 240
ENRRPQRRRS GNRRTRNRSR GQNRPTNVKE NTIKFEGDFD FESANAQFNR EELDKE 296 
Gene Ontology
  
Interpro
 IPR025762; DFDF.
 IPR019050; FDF_dom.
 IPR025609; Lsm14_N.
 IPR010920; LSM_dom. 
Pfam
 PF09532; FDF
 PF12701; LSM14 
SMART
  
PROSITE
 PS51512; DFDF 
PRINTS