CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-001787
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Pyruvate kinase 1 
Protein Synonyms/Alias
 PK 1; cell division cycle protein 19 
Gene Name
 CDC19 
Gene Synonyms/Alias
 PYK1; YAL038W 
Created Date
 July 27, 2013 
Organism
 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 
NCBI Taxa ID
 559292 
Lysine Modification
Position
Peptide
Type
References
30IIGTIGPKTNNPETLacetylation[1]
30IIGTIGPKTNNPETLubiquitination[2]
42ETLVALRKAGLNIVRubiquitination[2]
61HGSYEYHKSVIDNARacetylation[1]
61HGSYEYHKSVIDNARubiquitination[2]
69SVIDNARKSEELYPGacetylation[1]
69SVIDNARKSEELYPGubiquitination[2]
86LAIALDTKGPEIRTGacetylation[1]
86LAIALDTKGPEIRTGubiquitination[3, 4]
116MIFTTDDKYAKACDDacetylation[1]
124YAKACDDKIMYVDYKacetylation[1]
124YAKACDDKIMYVDYKubiquitination[2]
131KIMYVDYKNITKVISacetylation[1]
135VDYKNITKVISAGRIacetylation[1]
135VDYKNITKVISAGRIubiquitination[2]
166DDKTLKVKALNAGKIubiquitination[2]
172VKALNAGKICSHKGVubiquitination[2]
177AGKICSHKGVNLPGTacetylation[1]
177AGKICSHKGVNLPGTubiquitination[2]
194DLPALSEKDKEDLRFacetylation[1]
196PALSEKDKEDLRFGVacetylation[1]
204EDLRFGVKNGVHMVFubiquitination[2, 4]
233EVLGEQGKDVKIIVKacetylation[1]
233EVLGEQGKDVKIIVKubiquitination[2]
240KDVKIIVKIENQQGVubiquitination[2]
255NNFDEILKVTDGVMVacetylation[1]
255NNFDEILKVTDGVMVubiquitination[2, 4]
286VQKKLIAKSNLAGKPubiquitination[2]
292AKSNLAGKPVICATQacetylation[1]
292AKSNLAGKPVICATQubiquitination[2]
374DMRNCTPKPTSTTETubiquitination[2, 4]
394VAAVFEQKAKAIIVLacetylation[1]
394VAAVFEQKAKAIIVLubiquitination[2, 4]
396AVFEQKAKAIIVLSTubiquitination[2]
446VFPFVFEKEPVSDWTubiquitination[2, 4]
466RINFGIEKAKEFGILacetylation[1]
466RINFGIEKAKEFGILubiquitination[2]
468NFGIEKAKEFGILKKacetylation[1]
468NFGIEKAKEFGILKKubiquitination[2]
475KEFGILKKGDTYVSIacetylation[1, 5]
486YVSIQGFKAGAGHSNacetylation[1]
486YVSIQGFKAGAGHSNubiquitination[2]
Reference
 [1] Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae.
 Henriksen P, Wagner SA, Weinert BT, Sharma S, Bacinskaja G, Rehman M, Juffer AH, Walther TC, Lisby M, Choudhary C.
 Mol Cell Proteomics. 2012 Nov;11(11):1510-22. [PMID: 22865919]
 [2] Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation.
 Swaney DL, Beltrao P, Starita L, Guo A, Rush J, Fields S, Krogan NJ, VillĂ©n J.
 Nat Methods. 2013 Jul;10(7):676-82. [PMID: 23749301]
 [3] Identification, analysis, and prediction of protein ubiquitination sites.
 Radivojac P, Vacic V, Haynes C, Cocklin RR, Mohan A, Heyen JW, Goebl MG, Iakoucheva LM.
 Proteins. 2010 Feb 1;78(2):365-80. [PMID: 19722269]
 [4] Sites of ubiquitin attachment in Saccharomyces cerevisiae.
 Starita LM, Lo RS, Eng JK, von Haller PD, Fields S.
 Proteomics. 2012 Jan;12(2):236-40. [PMID: 22106047]
 [5] Preparative peptide isoelectric focusing as a tool for improving the identification of lysine-acetylated peptides from complex mixtures.
 Xie H, Bandhakavi S, Roe MR, Griffin TJ.
 J Proteome Res. 2007 May;6(5):2019-26. [PMID: 17397211
Functional Description
  
Sequence Annotation
 METAL 51 51 Potassium (By similarity).
 METAL 53 53 Potassium (By similarity).
 METAL 84 84 Potassium (By similarity).
 METAL 85 85 Potassium; via carbonyl oxygen (By
 METAL 242 242 Magnesium (Potential).
 METAL 266 266 Magnesium (By similarity).
 BINDING 49 49 Substrate (By similarity).
 BINDING 265 265 Substrate; via amide nitrogen (By
 BINDING 266 266 Substrate; via amide nitrogen (By
 BINDING 298 298 Substrate (By similarity).
 BINDING 337 337 ADP (Potential).
 MOD_RES 2 2 N-acetylserine.
 MOD_RES 9 9 Phosphoserine.
 MOD_RES 16 16 Phosphoserine.
 MOD_RES 31 31 Phosphothreonine.
 MOD_RES 70 70 Phosphoserine.
 MOD_RES 184 184 Phosphothreonine.
 MOD_RES 213 213 Phosphoserine.
 MOD_RES 316 316 Phosphoserine.
 MOD_RES 450 450 Phosphoserine.
 MOD_RES 478 478 Phosphothreonine.  
Keyword
 3D-structure; Acetylation; Allosteric enzyme; ATP-binding; Complete proteome; Glycolysis; Kinase; Magnesium; Metal-binding; Nucleotide-binding; Phosphoprotein; Potassium; Pyruvate; Reference proteome; Transferase. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 500 AA 
Protein Sequence
MSRLERLTSL NVVAGSDLRR TSIIGTIGPK TNNPETLVAL RKAGLNIVRM NFSHGSYEYH 60
KSVIDNARKS EELYPGRPLA IALDTKGPEI RTGTTTNDVD YPIPPNHEMI FTTDDKYAKA 120
CDDKIMYVDY KNITKVISAG RIIYVDDGVL SFQVLEVVDD KTLKVKALNA GKICSHKGVN 180
LPGTDVDLPA LSEKDKEDLR FGVKNGVHMV FASFIRTAND VLTIREVLGE QGKDVKIIVK 240
IENQQGVNNF DEILKVTDGV MVARGDLGIE IPAPEVLAVQ KKLIAKSNLA GKPVICATQM 300
LESMTYNPRP TRAEVSDVGN AILDGADCVM LSGETAKGNY PINAVTTMAE TAVIAEQAIA 360
YLPNYDDMRN CTPKPTSTTE TVAASAVAAV FEQKAKAIIV LSTSGTTPRL VSKYRPNCPI 420
ILVTRCPRAA RFSHLYRGVF PFVFEKEPVS DWTDDVEARI NFGIEKAKEF GILKKGDTYV 480
SIQGFKAGAG HSNTLQVSTV 500 
Gene Ontology
 GO:0005737; C:cytoplasm; IDA:SGD.
 GO:0005886; C:plasma membrane; IDA:SGD.
 GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
 GO:0000287; F:magnesium ion binding; IEA:InterPro.
 GO:0030955; F:potassium ion binding; IEA:InterPro.
 GO:0004743; F:pyruvate kinase activity; IDA:SGD.
 GO:0006096; P:glycolysis; IMP:SGD.
 GO:0006090; P:pyruvate metabolic process; IMP:SGD. 
Interpro
 IPR001697; Pyr_Knase.
 IPR015813; Pyrv/PenolPyrv_Kinase-like_dom.
 IPR011037; Pyrv_Knase-like_insert_dom.
 IPR015794; Pyrv_Knase_a/b.
 IPR018209; Pyrv_Knase_AS.
 IPR015793; Pyrv_Knase_brl.
 IPR015795; Pyrv_Knase_C.
 IPR015806; Pyrv_Knase_insert_dom. 
Pfam
 PF00224; PK
 PF02887; PK_C 
SMART
  
PROSITE
 PS00110; PYRUVATE_KINASE 
PRINTS
 PR01050; PYRUVTKNASE.