CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-009841
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Autonomous glycyl radical cofactor 
Protein Synonyms/Alias
  
Gene Name
 grcA 
Gene Synonyms/Alias
 yfiD; b2579; JW2563 
Created Date
 July 27, 2013 
Organism
 Escherichia coli (strain K12) 
NCBI Taxa ID
 83333 
Lysine Modification
Position
Peptide
Type
References
26FWLLDSEKGEARCIVacetylation[1]
48DEVVAVSKLGDIEYRacetylation[1, 2]
62REVPVEVKPEVRVEGacetylation[1, 3]
88ETLEDAVKHPEKYPQacetylation[1, 2]
92DAVKHPEKYPQLTIRacetylation[1, 2]
Reference
 [1] Acetyl-Phosphate Is a Critical Determinant of Lysine Acetylation in E. coli.
 Weinert BT, Iesmantavicius V, Wagner SA, Schölz C, Gummesson B, Beli P, Nyström T, Choudhary C.
 Mol Cell. 2013 Jul 25;51(2):265-72. [PMID: 23830618]
 [2] Lysine acetylation is a highly abundant and evolutionarily conserved modification in Escherichia coli.
 Zhang J, Sprung R, Pei J, Tan X, Kim S, Zhu H, Liu CF, Grishin NV, Zhao Y.
 Mol Cell Proteomics. 2009 Feb;8(2):215-25. [PMID: 18723842]
 [3] Comprehensive profiling of protein lysine acetylation in Escherichia coli.
 Zhang K, Zheng S, Yang JS, Chen Y, Cheng Z.
 J Proteome Res. 2013 Feb 1;12(2):844-51. [PMID: 23294111
Functional Description
 Acts as a radical domain for damaged PFL and possibly other radical proteins. 
Sequence Annotation
 DOMAIN 5 127 Glycine radical.
 MOD_RES 48 48 N6-acetyllysine.
 MOD_RES 88 88 N6-acetyllysine.
 MOD_RES 92 92 N6-acetyllysine.
 MOD_RES 102 102 Glycine radical (By similarity).  
Keyword
 Acetylation; Complete proteome; Direct protein sequencing; Organic radical; Reference proteome; Stress response. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 127 AA 
Protein Sequence
MITGIQITKA ANDDLLNSFW LLDSEKGEAR CIVAKAGYAE DEVVAVSKLG DIEYREVPVE 60
VKPEVRVEGG QHLNVNVLRR ETLEDAVKHP EKYPQLTIRV SGYAVRFNSL TPEQQRDVIA 120
RTFTESL 127 
Gene Ontology
 GO:0005737; C:cytoplasm; IDA:UniProtKB.
 GO:0003824; F:catalytic activity; IEA:InterPro.
 GO:0006950; P:response to stress; IEA:UniProtKB-KW. 
Interpro
 IPR019777; Form_AcTrfase_GR_CS.
 IPR001150; Gly_radical.
 IPR011140; Glycyl_radical_cofactor_GrcA. 
Pfam
 PF01228; Gly_radical 
SMART
  
PROSITE
 PS00850; GLY_RADICAL_1
 PS51149; GLY_RADICAL_2 
PRINTS