CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-024237
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Pyridoxal biosynthesis lyase PdxS 
Protein Synonyms/Alias
  
Gene Name
 pdxS 
Gene Synonyms/Alias
 MSMEG_2937; MSMEI_2863 
Created Date
 July 27, 2013 
Organism
 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) 
NCBI Taxa ID
 246196 
Lysine Modification
Position
Peptide
Type
References
275DDPDVLAKVSRGLGEpupylation[1]
Reference
 [1] Proteome-wide identification of mycobacterial pupylation targets.
 Poulsen C, Akhter Y, Jeon AH, Schmitt-Ulms G, Meyer HE, Stefanski A, Stühler K, Wilmanns M, Song YH.
 Mol Syst Biol. 2010 Jul 13;6:386. [PMID: 20631680
Functional Description
 Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring (By similarity). 
Sequence Annotation
  
Keyword
 Complete proteome; Lyase; Pyridoxal phosphate; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 303 AA 
Protein Sequence
METAAQNGSS NQTGTARVKR GMAEMLKGGV IMDVVTPEQA RIAEAAGAVA VMALERVPAD 60
IRAQGGVSRM SDPDMIEGII DAVTIPVMAK ARIGHFVEAQ ILQSLGVDYV DESEVLTPAD 120
YTNHIDKWKF TVPFVCGATN LGEALRRITE GAAMIRSKGE AGTGDVSNAT THMRKIGGEI 180
RRLTSMSEDE LYVAAKELQA PYELVVEVAR AGKLPVTLFT AGGIATPADA AMMMQLGAEG 240
VFVGSGIFKS GNPEQRAAAI VKATTFYDDP DVLAKVSRGL GEAMVGINVE EIAQPHRLAE 300
RGW 303 
Gene Ontology
 GO:0016829; F:lyase activity; IEA:UniProtKB-KW.
 GO:0042823; P:pyridoxal phosphate biosynthetic process; IEA:UniProtKB-UniPathway. 
Interpro
 IPR013785; Aldolase_TIM.
 IPR011060; RibuloseP-bd_barrel.
 IPR001852; Snz1p/Sor1. 
Pfam
 PF01680; SOR_SNZ 
SMART
  
PROSITE
 PS01235; PDXS_SNZ_1
 PS51129; PDXS_SNZ_2 
PRINTS