CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-036652
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 Dynactin subunit 4 
Protein Synonyms/Alias
  
Gene Name
 DCTN4 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
69RDVGMADKSVASGGWubiquitination[1, 2, 3, 4]
89PHTQRMNKLIEYYQQubiquitination[1, 3, 4, 5]
100YYQQLAQKEKVERDRubiquitination[1, 2, 4]
102QQLAQKEKVERDRKKubiquitination[3]
Reference
 [1] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [2] Global identification of modular cullin-RING ligase substrates.
 Emanuele MJ, Elia AE, Xu Q, Thoma CR, Izhar L, Leng Y, Guo A, Chen YN, Rush J, Hsu PW, Yen HC, Elledge SJ.
 Cell. 2011 Oct 14;147(2):459-74. [PMID: 21963094]
 [3] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [4] Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
 Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW.
 Nature. 2013 Apr 18;496(7445):372-6. [PMID: 23503661]
 [5] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 114 AA 
Protein Sequence
MPSAEAKLKK NRCANCFDCP GCMHTLSTRA TSISTQLPDD PAKTTMKKAY YLACGFCRWT 60
SRDVGMADKS VASGGWQEPE NPHTQRMNKL IEYYQQLAQK EKVERDRKKL ARRR 114 
Gene Ontology
  
Interpro
 IPR008603; Dynactin_p62. 
Pfam
 PF05502; Dynactin_p62 
SMART
  
PROSITE
  
PRINTS