CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-002774
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Phosphoglycerate kinase 1 
Protein Synonyms/Alias
  
Gene Name
 Pgk1 
Gene Synonyms/Alias
 Pgk-1 
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
6**MSLSNKLTLDKLDacetylation[1, 2]
6**MSLSNKLTLDKLDsuccinylation[2]
6**MSLSNKLTLDKLDubiquitination[3]
11SNKLTLDKLDVKGKRacetylation[1, 2, 4, 5]
11SNKLTLDKLDVKGKRsuccinylation[2]
11SNKLTLDKLDVKGKRubiquitination[3]
15TLDKLDVKGKRVVMRubiquitination[3]
30VDFNVPMKNNQITNNubiquitination[3]
41ITNNQRIKAAVPSIKacetylation[1]
48KAAVPSIKFCLDNGAacetylation[1, 2, 6]
48KAAVPSIKFCLDNGAsuccinylation[2]
48KAAVPSIKFCLDNGAubiquitination[3]
75DGVPMPDKYSLEPVAacetylation[1, 2, 5, 7]
75DGVPMPDKYSLEPVAubiquitination[3]
86EPVAAELKSLLGKDVacetylation[1]
86EPVAAELKSLLGKDVubiquitination[3]
91ELKSLLGKDVLFLKDacetylation[1, 2, 4, 5, 8]
91ELKSLLGKDVLFLKDsuccinylation[2]
91ELKSLLGKDVLFLKDubiquitination[3]
131FHVEEEGKGKDASGNacetylation[4, 8]
141DASGNKVKAEPAKIDacetylation[4, 6]
141DASGNKVKAEPAKIDubiquitination[3]
146KVKAEPAKIDAFRASacetylation[4]
146KVKAEPAKIDAFRASubiquitination[3]
156AFRASLSKLGDVYVNubiquitination[3]
184VGVNLPQKAGGFLMKubiquitination[3]
191KAGGFLMKKELNYFAacetylation[2]
191KAGGFLMKKELNYFAsuccinylation[2]
192AGGFLMKKELNYFAKacetylation[2]
192AGGFLMKKELNYFAKsuccinylation[2]
192AGGFLMKKELNYFAKubiquitination[3]
216LAILGGAKVADKIQLacetylation[5]
216LAILGGAKVADKIQLubiquitination[3]
220GGAKVADKIQLINNMacetylation[1, 5]
220GGAKVADKIQLINNMubiquitination[3]
264LYDEEGAKIVKDLMSacetylation[5]
264LYDEEGAKIVKDLMSubiquitination[3]
267EEGAKIVKDLMSKAEubiquitination[3]
272IVKDLMSKAEKNGVKacetylation[1]
272IVKDLMSKAEKNGVKubiquitination[3]
279KAEKNGVKITLPVDFubiquitination[3]
291VDFVTADKFDENAKTacetylation[1, 2, 5, 8]
291VDFVTADKFDENAKTubiquitination[3]
323CGTESSKKYAEAVGRacetylation[1, 2, 8]
323CGTESSKKYAEAVGRubiquitination[3]
353EAFARGTKSLMDEVVacetylation[2, 5]
353EAFARGTKSLMDEVVubiquitination[3]
361SLMDEVVKATSRGCIacetylation[1, 2, 5, 8]
361SLMDEVVKATSRGCIsuccinylation[2]
361SLMDEVVKATSRGCIubiquitination[3]
388AKWNTEDKVSHVSTGacetylation[2, 5]
388AKWNTEDKVSHVSTGubiquitination[3]
Reference
 [1] Quantitative acetylome analysis reveals the roles of SIRT1 in regulating diverse substrates and cellular pathways.
 Chen Y, Zhao W, Yang JS, Cheng Z, Luo H, Lu Z, Tan M, Gu W, Zhao Y.
 Mol Cell Proteomics. 2012 Oct;11(10):1048-62. [PMID: 22826441]
 [2] SIRT5-Mediated Lysine Desuccinylation Impacts Diverse Metabolic Pathways.
 Park J, Chen Y, Tishkoff DX, Peng C, Tan M, Dai L, Xie Z, Zhang Y, Zwaans BM, Skinner ME, Lombard DB, Zhao Y.
 Mol Cell. 2013 Jun 27;50(6):919-30. [PMID: 23806337]
 [3] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023]
 [4] Calorie restriction and SIRT3 trigger global reprogramming of the mitochondrial protein acetylome.
 Hebert AS, Dittenhafer-Reed KE, Yu W, Bailey DJ, Selen ES, Boersma MD, Carson JJ, Tonelli M, Balloon AJ, Higbee AJ, Westphall MS, Pagliarini DJ, Prolla TA, Assadi-Porter F, Roy S, Denu JM, Coon JJ.
 Mol Cell. 2013 Jan 10;49(1):186-99. [PMID: 23201123]
 [5] Proteomic investigations of lysine acetylation identify diverse substrates of mitochondrial deacetylase sirt3.
 Sol EM, Wagner SA, Weinert BT, Kumar A, Kim HS, Deng CX, Choudhary C.
 PLoS One. 2012;7(12):e50545. [PMID: 23236377]
 [6] Quantification of mitochondrial acetylation dynamics highlights prominent sites of metabolic regulation.
 Still AJ, Floyd BJ, Hebert AS, Bingman CA, Carson JJ, Gunderson DR, Dolan BK, Grimsrud PA, Dittenhafer-Reed KE, Stapleton DS, Keller MP, Westphall MS, Denu JM, Attie AD, Coon JJ, Pagliarini DJ.
 J Biol Chem. 2013 Jul 17;. [PMID: 23864654]
 [7] The fasted/fed mouse metabolic acetylome: N6-acetylation differences suggest acetylation coordinates organ-specific fuel switching.
 Yang L, Vaitheesvaran B, Hartil K, Robinson AJ, Hoopmann MR, Eng JK, Kurland IJ, Bruce JE.
 J Proteome Res. 2011 Sep 2;10(9):4134-49. [PMID: 21728379]
 [8] Quantitative assessment of the impact of the gut microbiota on lysine epsilon-acetylation of host proteins using gnotobiotic mice.
 Simon GM, Cheng J, Gordon JI.
 Proc Natl Acad Sci U S A. 2012 Jul 10;109(28):11133-8. [PMID: 22733758
Functional Description
  
Sequence Annotation
 NP_BIND 373 376 ATP (By similarity).
 REGION 24 26 Substrate binding (By similarity).
 REGION 63 66 Substrate binding (By similarity).
 BINDING 39 39 Substrate (By similarity).
 BINDING 123 123 Substrate (By similarity).
 BINDING 171 171 Substrate (By similarity).
 BINDING 220 220 ATP (By similarity).
 BINDING 313 313 ATP; via carbonyl oxygen (By similarity).
 BINDING 344 344 ATP (By similarity).
 MOD_RES 2 2 N-acetylserine (By similarity).
 MOD_RES 11 11 N6-acetyllysine (By similarity).
 MOD_RES 48 48 N6-acetyllysine (By similarity).
 MOD_RES 75 75 N6-acetyllysine (By similarity).
 MOD_RES 76 76 Phosphotyrosine.
 MOD_RES 86 86 N6-acetyllysine (By similarity).
 MOD_RES 97 97 N6-acetyllysine (By similarity).
 MOD_RES 131 131 N6-acetyllysine; alternate (By
 MOD_RES 131 131 N6-malonyllysine; alternate (By
 MOD_RES 146 146 N6-acetyllysine (By similarity).
 MOD_RES 196 196 Phosphotyrosine.
 MOD_RES 199 199 N6-acetyllysine (By similarity).
 MOD_RES 203 203 Phosphoserine.
 MOD_RES 267 267 N6-acetyllysine (By similarity).
 MOD_RES 291 291 N6-acetyllysine (By similarity).
 MOD_RES 390 390 Phosphoserine.  
Keyword
 Acetylation; ATP-binding; Complete proteome; Cytoplasm; Direct protein sequencing; Glycolysis; Kinase; Nucleotide-binding; Phosphoprotein; Reference proteome; Transferase. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 417 AA 
Protein Sequence
MSLSNKLTLD KLDVKGKRVV MRVDFNVPMK NNQITNNQRI KAAVPSIKFC LDNGAKSVVL 60
MSHLGRPDGV PMPDKYSLEP VAAELKSLLG KDVLFLKDCV GPEVENACAN PAAGTVILLE 120
NLRFHVEEEG KGKDASGNKV KAEPAKIDAF RASLSKLGDV YVNDAFGTAH RAHSSMVGVN 180
LPQKAGGFLM KKELNYFAKA LESPERPFLA ILGGAKVADK IQLINNMLDK VNEMIIGGGM 240
AFTFLKVLNN MEIGTSLYDE EGAKIVKDLM SKAEKNGVKI TLPVDFVTAD KFDENAKTGQ 300
ATVASGIPAG WMGLDCGTES SKKYAEAVGR AKQIVWNGPV GVFEWEAFAR GTKSLMDEVV 360
KATSRGCITI IGGGDTATCC AKWNTEDKVS HVSTGGGASL ELLEGKVLPG VDALSNV 417 
Gene Ontology
 GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
 GO:0005524; F:ATP binding; ISS:UniProtKB.
 GO:0004618; F:phosphoglycerate kinase activity; ISS:UniProtKB.
 GO:0006096; P:glycolysis; IEA:UniProtKB-UniPathway. 
Interpro
 IPR001576; Phosphoglycerate_kinase.
 IPR015901; Phosphoglycerate_kinase_C.
 IPR015911; Phosphoglycerate_kinase_CS.
 IPR015824; Phosphoglycerate_kinase_N. 
Pfam
 PF00162; PGK 
SMART
  
PROSITE
 PS00111; PGLYCERATE_KINASE 
PRINTS
 PR00477; PHGLYCKINASE.