CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-001673
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Apoptosis-inducing factor 1, mitochondrial 
Protein Synonyms/Alias
 Programmed cell death protein 8 
Gene Name
 AIFM1 
Gene Synonyms/Alias
 AIF; PDCD8 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
75KVRREGVKVMPNAIVubiquitination[1]
231ATAQDNPKSATEQSGubiquitination[1]
Reference
 [1] Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
 Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW.
 Nature. 2013 Apr 18;496(7445):372-6. [PMID: 23503661
Functional Description
 Functions both as NADH oxidoreductase and as regulator of apoptosis. In response to apoptotic stimuli, it is released from the mitochondrion intermembrane space into the cytosol and to the nucleus, where it functions as a proapoptotic factor in a caspase-independent pathway. In contrast, functions as an antiapoptotic factor in normal mitochondria via its NADH oxidoreductase activity. The soluble form (AIFsol) found in the nucleus induces 'parthanatos' i.e. caspase-independent fragmentation of chromosomal DNA. Interacts with EIF3G,and thereby inhibits the EIF3 machinery and protein synthesis, and activates casapse-7 to amplify apoptosis. Plays a critical role in caspase- independent, pyknotic cell death in hydrogen peroxide-exposed cells. Binds to DNA in a sequence-independent manner. 
Sequence Annotation
 NP_BIND 138 142 FAD.
 NP_BIND 164 165 FAD.
 NP_BIND 454 455 FAD.
 REGION 134 483 FAD-dependent oxidoreductase (By
 MOTIF 446 451 Nuclear localization signal (Potential).
 BINDING 172 172 FAD.
 BINDING 177 177 FAD.
 BINDING 233 233 FAD; via amide nitrogen and carbonyl
 BINDING 285 285 FAD.
 BINDING 438 438 FAD.
 BINDING 483 483 FAD; via carbonyl oxygen.
 MOD_RES 105 105 Phosphothreonine.
 MOD_RES 268 268 Phosphoserine.
 MOD_RES 593 593 N6-acetyllysine (By similarity).
 CROSSLNK 255 255 Glycyl lysine isopeptide (Lys-Gly)  
Keyword
 3D-structure; Acetylation; Alternative splicing; Apoptosis; Charcot-Marie-Tooth disease; Complete proteome; Cytoplasm; Deafness; Direct protein sequencing; Disease mutation; DNA-binding; FAD; Flavoprotein; Isopeptide bond; Membrane; Mental retardation; Mitochondrion; Mitochondrion inner membrane; NAD; Neurodegeneration; Neuropathy; Nucleus; Oxidoreductase; Phosphoprotein; Reference proteome; Transit peptide; Ubl conjugation. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 613 AA 
Protein Sequence
MFRCGGLAAG ALKQKLVPLV RTVCVRSPRQ RNRLPARALG TEVIQLFPEK GNMGKILPEY 60
LSNWTMEKVR REGVKVMPNA IVQSVGVSSG KLLIKLKDGR KVETDHIVAA VGLEPNVELA 120
KTGGLEIDSD FGGFRVNAEL QARSNIWVAG DAACFYDIKL GRRRVEHHDH AVVSGRLAGE 180
NMTGAAKPYW HQSMFWSDLG PDVGYEAIGL VDSSLPTVGV FAKATAQDNP KSATEQSGTG 240
IRSESETESE ASEITIPPST PAVPQAPVQG EDYGKGVIFY LRDKVVVGIV LWNIFNRMPI 300
ARKIIKDGEQ HEDLNEVAKL FNIHED 326 
Gene Ontology
 GO:0005829; C:cytosol; ISS:UniProtKB.
 GO:0005743; C:mitochondrial inner membrane; IEA:UniProtKB-SubCell.
 GO:0005758; C:mitochondrial intermembrane space; IDA:UniProtKB.
 GO:0005634; C:nucleus; IDA:UniProtKB.
 GO:0048471; C:perinuclear region of cytoplasm; IEA:UniProtKB-SubCell.
 GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
 GO:0009055; F:electron carrier activity; TAS:ProtInc.
 GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro.
 GO:0016651; F:oxidoreductase activity, acting on NAD(P)H; IDA:UniProtKB.
 GO:0006919; P:activation of cysteine-type endopeptidase activity involved in apoptotic process; IDA:UniProtKB.
 GO:0006309; P:apoptotic DNA fragmentation; TAS:ProtInc.
 GO:0045454; P:cell redox homeostasis; IEA:InterPro.
 GO:0070059; P:intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress; ISS:UniProtKB.
 GO:0032981; P:mitochondrial respiratory chain complex I assembly; IMP:UniProtKB.
 GO:0051402; P:neuron apoptotic process; IEA:Compara.
 GO:0030182; P:neuron differentiation; IDA:UniProtKB. 
Interpro
 IPR016156; FAD/NAD-linked_Rdtase_dimer.
 IPR013027; FAD_pyr_nucl-diS_OxRdtase.
 IPR004099; Pyr_nucl-diS_OxRdtase_dimer.
 IPR023753; Pyr_nucl-diS_OxRdtase_FAD/NAD.
 IPR001327; Pyr_OxRdtase_NAD-bd_dom. 
Pfam
 PF00070; Pyr_redox
 PF07992; Pyr_redox_2 
SMART
  
PROSITE
  
PRINTS
 PR00368; FADPNR.