CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-044940
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 Programmed cell death protein 5 
Protein Synonyms/Alias
  
Gene Name
 PDCD5 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
83QGLIEILKKVSQQTEacetylation[1]
83QGLIEILKKVSQQTEubiquitination[2, 3, 4]
84GLIEILKKVSQQTEKubiquitination[4, 5]
91KVSQQTEKTTTVKFNubiquitination[4, 5]
96TEKTTTVKFNRRKVMubiquitination[2]
Reference
 [1] Proteomic investigations of lysine acetylation identify diverse substrates of mitochondrial deacetylase sirt3.
 Sol EM, Wagner SA, Weinert BT, Kumar A, Kim HS, Deng CX, Choudhary C.
 PLoS One. 2012;7(12):e50545. [PMID: 23236377]
 [2] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [3] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [4] Integrated proteomic analysis of post-translational modifications by serial enrichment.
 Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA.
 Nat Methods. 2013 Jul;10(7):634-7. [PMID: 23749302]
 [5] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 111 AA 
Protein Sequence
MLHGNADSCV LIVFDLCFRC REAEMRNSIL AQVLDQSARA RLSNLALVKP EKTKAVENYL 60
IQMARYGQLS EKVSEQGLIE ILKKVSQQTE KTTTVKFNRR KVMDSDEDDD Y 111 
Gene Ontology
 GO:0003677; F:DNA binding; IEA:InterPro. 
Interpro
 IPR002836; TFAR19_DNA-bd. 
Pfam
 PF01984; dsDNA_bind 
SMART
  
PROSITE
  
PRINTS