CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-011992
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 COP9 signalosome complex subunit 1 
Protein Synonyms/Alias
 SGN1; Signalosome subunit 1; G protein pathway suppressor 1; GPS-1; JAB1-containing signalosome subunit 1; Protein MFH 
Gene Name
 GPS1 
Gene Synonyms/Alias
 COPS1; CSN1 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
144KALLKLEKLDTDLKNubiquitination[1]
150EKLDTDLKNYKGNSIubiquitination[1, 2]
153DTDLKNYKGNSIKESubiquitination[1]
158NYKGNSIKESIRRGHubiquitination[1]
183GDLSNALKCYSRARDubiquitination[2]
224HVLSYVSKAESTPEIubiquitination[1]
248QTQAILTKLKCAAGLubiquitination[1, 2]
317VISSSSFKLFLELEPubiquitination[1]
422ARVDSHSKILYARDVubiquitination[1, 2]
438QRSTTFEKSLLMGKEubiquitination[1, 2]
444EKSLLMGKEFQRRAKubiquitination[1, 2]
467LRNQIHVKSPPREGSacetylation[3]
467LRNQIHVKSPPREGSubiquitination[1, 2]
Reference
 [1] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [2] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [3] Lysine acetylation targets protein complexes and co-regulates major cellular functions.
 Choudhary C, Kumar C, Gnad F, Nielsen ML, Rehman M, Walther TC, Olsen JV, Mann M.
 Science. 2009 Aug 14;325(5942):834-40. [PMID: 19608861
Functional Description
 Essential component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, c-jun/JUN, IkappaBalpha/NFKBIA, ITPK1 and IRF8/ICSBP, possibly via its association with CK2 and PKD kinases. CSN- dependent phosphorylation of TP53 and JUN promotes and protects degradation by the Ubl system, respectively. Suppresses G-protein- and mitogen-activated protein kinase-mediated signal transduction. 
Sequence Annotation
 DOMAIN 324 428 PCI.
 MOD_RES 468 468 Phosphoserine.
 MOD_RES 474 474 Phosphoserine.
 MOD_RES 479 479 Phosphothreonine.
 MOD_RES 483 483 Phosphoserine.  
Keyword
 Alternative splicing; Complete proteome; Cytoplasm; Direct protein sequencing; Nucleus; Phosphoprotein; Reference proteome; Signalosome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 491 AA 
Protein Sequence
MPLPVQVFNL QGAVEPMQID VDPQEDPQNA PDVNYVVENP SLDLEQYAAS YSGLMRIERL 60
QFIADHCPTL RVEALKMALS FVQRTFNVDM YEEIHRKLSE ATRSSLRELQ NAPDAIPESG 120
VEPPALDTAW VEATRKKALL KLEKLDTDLK NYKGNSIKES IRRGHDDLGD HYLDCGDLSN 180
ALKCYSRARD YCTSAKHVIN MCLNVIKVSV YLQNWSHVLS YVSKAESTPE IAEQRGERDS 240
QTQAILTKLK CAAGLAELAA RKYKQAAKCL LLASFDHCDF PELLSPSNVA IYGGLCALAT 300
FDRQELQRNV ISSSSFKLFL ELEPQVRDII FKFYESKYAS CLKMLDEMKD NLLLDMYLAP 360
HVRTLYTQIR NRALIQYFSP YVSADMHRMA AAFNTTVAAL EDELTQLILE GLISARVDSH 420
SKILYARDVD QRSTTFEKSL LMGKEFQRRA KAMMLRAAVL RNQIHVKSPP REGSQGELTP 480
ANSQSRMSTN M 491 
Gene Ontology
 GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
 GO:0008180; C:signalosome; IDA:UniProtKB.
 GO:0005095; F:GTPase inhibitor activity; TAS:ProtInc.
 GO:0007049; P:cell cycle; TAS:ProtInc.
 GO:0010388; P:cullin deneddylation; IDA:UniProtKB.
 GO:0000188; P:inactivation of MAPK activity; TAS:ProtInc.
 GO:0007254; P:JNK cascade; TAS:ProtInc. 
Interpro
 IPR019585; 26S_proteasome_reg_su-Rpn7.
 IPR000717; PCI_dom.
 IPR011990; TPR-like_helical.
 IPR011991; WHTH_DNA-bd_dom. 
Pfam
 PF01399; PCI
 PF10602; RPN7 
SMART
 SM00088; PINT 
PROSITE
  
PRINTS