CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-032029
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 
Protein Synonyms/Alias
 cDNA FLJ50809, highly similar to Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDa subunit (EC 2.4.1.119) 
Gene Name
 RPN1 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
15RNVESYTKLGNPTRSacetylation[1]
15RNVESYTKLGNPTRSubiquitination[2, 3, 4, 5, 6, 7]
43AYSQDTFKVHYENNSubiquitination[3]
86KHTGAVLKGPFSRYDubiquitination[3, 6]
109ISSIRSFKTILPAAAubiquitination[2, 3]
180LGDQYALKMRFVDHVubiquitination[3]
199VIDSLTVKIILPEGAubiquitination[3]
207IILPEGAKNIEIDSPubiquitination[3, 4, 5, 6]
241RPVIVAYKKNLVEQHubiquitination[3]
293RLDFSITKDPAAEARubiquitination[3]
316QVLTLVNKRIGLYRHubiquitination[3, 4, 5, 7]
344ISTLNSGKKSLETEHubiquitination[3]
352KSLETEHKALTSEIAacetylation[1, 7]
366ALLQSRLKTEGSDLCacetylation[7]
366ALLQSRLKTEGSDLCubiquitination[3, 4, 5, 7, 8]
381DRVSEMQKLDAQVKEacetylation[1, 7]
381DRVSEMQKLDAQVKEubiquitination[2, 3, 4, 5, 6, 7]
387QKLDAQVKELVLKSAubiquitination[2, 3, 4, 5, 6, 7]
406RLVAGKLKKDTYIENacetylation[7]
406RLVAGKLKKDTYIENubiquitination[4, 5, 7]
407LVAGKLKKDTYIENEubiquitination[4, 6]
415DTYIENEKLISGKRQacetylation[1]
Reference
 [1] Proteomic investigations of lysine acetylation identify diverse substrates of mitochondrial deacetylase sirt3.
 Sol EM, Wagner SA, Weinert BT, Kumar A, Kim HS, Deng CX, Choudhary C.
 PLoS One. 2012;7(12):e50545. [PMID: 23236377]
 [2] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [3] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [4] Global identification of modular cullin-RING ligase substrates.
 Emanuele MJ, Elia AE, Xu Q, Thoma CR, Izhar L, Leng Y, Guo A, Chen YN, Rush J, Hsu PW, Yen HC, Elledge SJ.
 Cell. 2011 Oct 14;147(2):459-74. [PMID: 21963094]
 [5] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [6] Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
 Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW.
 Nature. 2013 Apr 18;496(7445):372-6. [PMID: 23503661]
 [7] Integrated proteomic analysis of post-translational modifications by serial enrichment.
 Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA.
 Nat Methods. 2013 Jul;10(7):634-7. [PMID: 23749302]
 [8] Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition.
 Udeshi ND, Mani DR, Eisenhaure T, Mertins P, Jaffe JD, Clauser KR, Hacohen N, Carr SA.
 Mol Cell Proteomics. 2012 May;11(5):148-59. [PMID: 22505724
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome; Transferase. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 435 AA 
Protein Sequence
MRVKLASRNV ESYTKLGNPT RSEDLLDYGP FRDVPAYSQD TFKVHYENNS PFLTITSMTR 60
VIEVSHWGNI AVEENVDLKH TGAVLKGPFS RYDYQRQPDS GISSIRSFKT ILPAAAQDVY 120
YRDEIGNVST SHLLILDDSV EMEIRPRFPL FGGWKTHYIV GYNLPSYEYL YNLGDQYALK 180
MRFVDHVFDE QVIDSLTVKI ILPEGAKNIE IDSPYEISRA PDELHYTYLD TFGRPVIVAY 240
KKNLVEQHIQ DIVVHYTFNK VLMLQEPLLV VAAFYILFFT VIIYVRLDFS ITKDPAAEAR 300
MKVACITEQV LTLVNKRIGL YRHFDETVNR YKQSRDISTL NSGKKSLETE HKALTSEIAL 360
LQSRLKTEGS DLCDRVSEMQ KLDAQVKELV LKSAVEAERL VAGKLKKDTY IENEKLISGK 420
RQELVTKIDH ILDAL 435 
Gene Ontology
 GO:0005789; C:endoplasmic reticulum membrane; IEA:Compara.
 GO:0016021; C:integral to membrane; IEA:InterPro.
 GO:0004579; F:dolichyl-diphosphooligosaccharide-protein glycotransferase activity; IEA:InterPro.
 GO:0006486; P:protein glycosylation; IEA:InterPro. 
Interpro
 IPR007676; Ribophorin_I. 
Pfam
 PF04597; Ribophorin_I 
SMART
  
PROSITE
  
PRINTS