CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-023818
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Transformation/transcription domain-associated protein 
Protein Synonyms/Alias
 350/400 kDa PCAF-associated factor; PAF350/400; STAF40; Tra1 homolog 
Gene Name
 TRRAP 
Gene Synonyms/Alias
 PAF400 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
1751PNFGDELKAKVLQHIubiquitination[1]
1796ITSVFITKVLDPEKQubiquitination[1]
2004KWELQRIKDQQPDSDubiquitination[1]
2029NSVSSSIKRGLSVDSubiquitination[1]
3569LSLVEIYKQRCAKKGubiquitination[1]
Reference
 [1] Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
 Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW.
 Nature. 2013 Apr 18;496(7445):372-6. [PMID: 23503661
Functional Description
 Adapter protein, which is found in various multiprotein chromatin complexes with histone acetyltransferase activity (HAT), which gives a specific tag for epigenetic transcription activation. Component of the NuA4 histone acetyltransferase complex which is responsible for acetylation of nucleosomal histones H4 and H2A. Plays a central role in MYC transcription activation, and also participates in cell transformation by MYC. Required for p53/TP53-, E2F1- and E2F4-mediated transcription activation. Also involved in transcription activation mediated by the adenovirus E1A, a viral oncoprotein that deregulates transcription of key genes. Probably acts by linking transcription factors such as E1A, MYC or E2F1 to HAT complexes such as STAGA thereby allowing transcription activation. Probably not required in the steps following histone acetylation in processes of transcription activation. May be required for the mitotic checkpoint and normal cell cycle progression. 
Sequence Annotation
 DOMAIN 2704 3275 FAT.
 DOMAIN 3528 3826 PI3K/PI4K.
 DOMAIN 3827 3859 FATC.
 REGION 2010 2388 Interaction with TP53.
 MOTIF 2047 2062 Bipartite nuclear localization signal
 MOD_RES 2051 2051 Phosphoserine.
 MOD_RES 2077 2077 Phosphoserine.
 MOD_RES 3078 3078 N6-acetyllysine.  
Keyword
 Acetylation; Activator; Alternative splicing; Chromatin regulator; Complete proteome; Direct protein sequencing; Nucleus; Phosphoprotein; Polymorphism; Reference proteome; Transcription; Transcription regulation. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 3859 AA 
Protein Sequence
MAFVATQGAT VVDQTTLMKK YLQFVAALTD VNTPDETKLK MMQEVSENFE NVTSSPQYST 60
FLEHIIPRFL TFLQDGEVQF LQEKPAQQLR KLVLEIIHRI PTNEHLRPHT KNVLSVMFRF 120
LETENEENVL ICLRIIIELH KQFRPPITQE IHHFLDFVKQ IYKELPKVVN RYFENPQVIP 180
ENTVPPPEMV GMITTIAVKV NPEREDSETR THSIIPRGSL SLKVLAELPI IVVLMYQLYK 240
LNIHNVVAEF VPLIMNTIAI QVSAQARQHK LYNKELYADF IAAQIKTLSF LAYIIRIYQE 300
LVTKYSQQMV KGMLQLLSNC PAETAHLRKE LLIAAKHILT TELRNQFIPC MDKLFDESIL 360
IGSGYTARET LRPLAYSTLA DLVHHVRQHL PLSDLSLAVQ LFAKNIDDES LPSSIQTMSC 420
KLLLNLVDCI RSKSEQESGN GRDVLMRMLE VFVLKFHTIA RYQLSAIFKK CKPQSELGAV 480
EAALPGVPTA PAAPGPAPSP APVPAPPPPP PPPPPATPVT PAPVPPFEKQ GEKDKEDKQT 540
FQVTDCRSLV KTLVCGVKTI TWGITSCKAP GEAQFIPNKQ LQPKETQIYI KLVKYAMQAL 600
DIYQVQIAGN GQTYIRVANC QTVRMKEEKE VLEHFAGVFT MMNPLTFKEI FQTTVPYMVE 660
RISKNYALQI VANSFLANPT TSALFATILV EYLLDRLPEM GSNVELSNLY LKLFKLVFGS 720
VSLFAAENEQ MLKPHLHKIV NSSMELAQTA KEPYNYFLLL RALFRSIGGG SHDLLYQEFL 780
PLLPNLLQGL NMLQSGLHKQ HMKDLFVELC LTVPVRLSSL LPYLPMLMDP LVSALNGSQT 840
LVSQGLRTLE LCVDNLQPDF LYDHIQPVRA ELMQALWRTL RNPADSISHV AYRVLGKFGG 900
SNRKMLKESQ KLHYVVTEVQ GPSITVEFSD CKASLQLPME KAIETALDCL KSANTEPYYR 960
RQAWEVIKCF LVAMMSLEDN KHALYQLLAH PNFTEKTIPN VIISHRYKAQ DTPARKTFEQ 1020
ALTGAFMSAV IKDLRPSALP FVASLIRHYT MVAVAQQCGP FLLPCYQVGS QPSTAMFHSE 1080
ENGSKGMDPL VLIDAIAICM AYEEKELCKI GEVALAVIFD VASIILGSKE RACQLPLFSY 1140
IVERLCACCY EQAWYAKLGG VVSIKFLMER LPLTWVLQNQ QTFLKALLFV MMDLTGEVSN 1200
GAVAMAKTTL EQLLMRCATP LKDEERAEEI VAAQEKSFHH VTHDLVREVT SPNSTVRKQA 1260
MHSLQVLAQV TGKSVTVIME PHKEVLQDMV PPKKHLLRHQ PANAQIGLME GNTFCTTLQP 1320
RLFTMDLNVV EHKVFYTELL NLCEAEDSAL TKLPCYKSLP SLVPLRIAAL NALAACNYLP 1380
QSREKIIAAL FKALNSTNSE LQEAGEACMR KFLEGATIEV DQIHTHMRPL LMMLGDYRSL 1440
TLNVVNRLTS VTRLFPNSFN DKFCDQMMQH LRKWMEVVVI THKGGQRSDG NEMKICSAII 1500
NLFHLIPAAP QTLVKPLLEV VMKTERAMLI EAGSPFREPL IKFLTRHPSQ TVELFMMEAT 1560
LNDPQWSRMF MSFLKHKDAR PLRDVLAANP NRFITLLLPG GAQTAVRPGS PSTSTMRLDL 1620
QFQAIKIISI IVKNDDSWLA SQHSLVSQLR RVWVSENFQE RHRKENMAAT NWKEPKLLAY 1680
CLLNYCKRNY GDIELLFQLL RAFTGRFLCN MTFLKEYMEE EIPKNYSIAQ KRALFFRFVD 1740
FNDPNFGDEL KAKVLQHILN PAFLYSFEKG EGEQLLGPPN PEGDNPESIT SVFITKVLDP 1800
EKQADMLDSL RIYLLQYATL LVEHAPHHIH DNNKNRNSKL RRLMTFAWPC LLSKACVDPA 1860
CKYSGHLLLA HIIAKFAIHK KIVLQVFHSL LKAHAMEARA IVRQAMAILT PAVPARMEDG 1920
HQMLTHWTRK IIVEEGHTVP QLVHILHLIV QHFKVYYPVR HHLVQHMVSA MQRLGFTPSV 1980
TIEQRRLAVD LSEVVIKWEL QRIKDQQPDS DMDPNSSGEG VNSVSSSIKR GLSVDSAQEV 2040
KRFRTATGAI SAVFGRSQSL PGADSLLAKP IDKQHTDTVV NFLIRVACQV NDNTNTAGSP 2100
GEVLSRRCVN LLKTALRPDM WPKSELKLQW FDKLLMTVEQ PNQVNYGNIC TGLEVLSFLL 2160
TVLQSPAILS SFKPLQRGIA ACMTCGNTKV LRAVHSLLSR LMSIFPTEPS TSSVASKYEE 2220
LECLYAAVGK VIYEGLTNYE KATNANPSQL FGTLMILKSA CSNNPSYIDR LISVFMRSLQ 2280
KMVREHLNPQ AASGSTEATS GTSELVMLSL ELVKTRLAVM SMEMRKNFIQ AILTSLIEKS 2340
PDAKILRAVV KIVEEWVKNN SPMAANQTPT LREKSILLVK MMTYIEKRFP EDLELNAQFL 2400
DLVNYVYRDE TLSGSELTAK LEPAFLSGLR CAQPLIRAKF FEVFDNSMKR RVYERLLYVT 2460
CSQNWEAMGN HFWIKQCIEL LLAVCEKSTP IGTSCQGAML PSITNVINLA DSHDRAAFAM 2520
VTHVKQEPRE RENSESKEED VEIDIELAPG DQTSTPKTKE LSEKDIGNQL HMLTNRHDKF 2580
LDTLREVKTG ALLSAFVQLC HISTTLAEKT WVQLFPRLWK ILSDRQQHAL AGEISPFLCS 2640
GSHQVQRDCQ PSALNCFVEA MSQCVPPIPI RPCVLKYLGK THNLWFRSTL MLEHQAFEKG 2700
LSLQIKPKQT TEFYEQESIT PPQQEILDSL AELYSLLQEE DMWAGLWQKR CKYSETATAI 2760
AYEQHGFFEQ AQESYEKAMD KAKKEHERSN ASPAIFPEYQ LWEDHWIRCS KELNQWEALT 2820
EYGQSKGHIN PYLVLECAWR VSNWTAMKEA LVQVEVSCPK EMAWKVNMYR GYLAICHPEE 2880
QQLSFIERLV EMASSLAIRE WRRLPHVVSH VHTPLLQAAQ QIIELQEAAQ INAGLQPTNL 2940
GRNNSLHDMK TVVKTWRNRL PIVSDDLSHW SSIFMWRQHH YQAIVTAYEN SSQHDPSSNN 3000
AMLGVHASAS AIIQYGKIAR KQGLVNVALD ILSRIHTIPT VPIVDCFQKI RQQVKCYLQL 3060
AGVMGKNECM QGLEVIESTN LKYFTKEMTA EFYALKGMFL AQINKSEEAN KAFSAAVQMH 3120
DVLVKAWAMW GDYLENIFVK ERQLHLGVSA ITCYLHACRH QNESKSRKYL AKVLWLLSFD 3180
DDKNTLADAV DKYCIGVPPI QWLAWIPQLL TCLVGSEGKL LLNLISQVGR VYPQAVYFPI 3240
RTLYLTLKIE QRERYKSDPG PIRATAPMWR CSRIMHMQRE LHPTLLSSLE GIVDQMVWFR 3300
ENWHEEVLRQ LQQGLAKCYS VAFEKSGAVS DAKITPHTLN FVKKLVSTFG VGLENVSNVS 3360
TMFSSAASES LARRAQATAQ DPVFQKLKGQ FTTDFDFSVP GSMKLHNLIS KLKKWIKILE 3420
AKTKQLPKFF LIEEKCRFLS NFSAQTAEVE IPGEFLMPKP THYYIKIARF MPRVEIVQKH 3480
NTAARRLYIR GHNGKIYPYL VMNDACLTES RREERVLQLL RLLNPCLEKR KETTKRHLFF 3540
TVPRVVAVSP QMRLVEDNPS SLSLVEIYKQ RCAKKGIEHD NPISRYYDRL ATVQARGTQA 3600
SHQVLRDILK EVQSNMVPRS MLKEWALHTF PNATDYWTFR KMFTIQLALI GFAEFVLHLN 3660
RLNPEMLQIA QDTGKLNVAY FRFDINDATG DLDANRPVPF RLTPNISEFL TTIGVSGPLT 3720
ASMIAVARCF AQPNFKVDGI LKTVLRDEII AWHKKTQEDT SSPLSAAGQP ENMDSQQLVS 3780
LVQKAVTAIM TRLHNLAQFE GGESKVNTLV AAANSLDNLC RMDPAWHPWL 3830 
Gene Ontology
 GO:0035267; C:NuA4 histone acetyltransferase complex; IDA:UniProtKB.
 GO:0000125; C:PCAF complex; NAS:UniProtKB.
 GO:0030914; C:STAGA complex; IDA:UniProtKB.
 GO:0033276; C:transcription factor TFTC complex; IDA:UniProtKB.
 GO:0016773; F:phosphotransferase activity, alcohol group as acceptor; IEA:InterPro.
 GO:0003713; F:transcription coactivator activity; IEA:Compara.
 GO:0003712; F:transcription cofactor activity; IDA:UniProtKB.
 GO:0016578; P:histone deubiquitination; IDA:UniProtKB.
 GO:0043968; P:histone H2A acetylation; IDA:UniProtKB.
 GO:0043967; P:histone H4 acetylation; IDA:UniProtKB.
 GO:0007093; P:mitotic cell cycle checkpoint; IEA:Compara.
 GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.
 GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. 
Interpro
 IPR011989; ARM-like.
 IPR016024; ARM-type_fold.
 IPR003152; FATC.
 IPR011009; Kinase-like_dom.
 IPR000403; PI3/4_kinase_cat_dom.
 IPR003151; PIK-rel_kinase_FAT.
 IPR014009; PIK_FAT.
 IPR011990; TPR-like_helical. 
Pfam
 PF02259; FAT
 PF00454; PI3_PI4_kinase 
SMART
 SM00146; PI3Kc 
PROSITE
 PS51189; FAT
 PS51190; FATC
 PS00915; PI3_4_KINASE_1
 PS00916; PI3_4_KINASE_2
 PS50290; PI3_4_KINASE_3 
PRINTS