CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-006258
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 GTP-binding protein YPT7 
Protein Synonyms/Alias
  
Gene Name
 YPT7 
Gene Synonyms/Alias
 VAM4; YML001W; YM8270.02 
Created Date
 July 27, 2013 
Organism
 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 
NCBI Taxa ID
 559292 
Lysine Modification
Position
Peptide
Type
References
21LGDSGVGKTSLMHRYubiquitination[1]
32MHRYVNDKYSQQYKAacetylation[2]
32MHRYVNDKYSQQYKAubiquitination[1]
56EVTVDGDKVATMQVWubiquitination[1]
140SKKIVSEKSAQELAKubiquitination[1]
147KSAQELAKSLGDIPLubiquitination[1, 3]
Reference
 [1] Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation.
 Swaney DL, Beltrao P, Starita L, Guo A, Rush J, Fields S, Krogan NJ, VillĂ©n J.
 Nat Methods. 2013 Jul;10(7):676-82. [PMID: 23749301]
 [2] Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae.
 Henriksen P, Wagner SA, Weinert BT, Sharma S, Bacinskaja G, Rehman M, Juffer AH, Walther TC, Lisby M, Choudhary C.
 Mol Cell Proteomics. 2012 Nov;11(11):1510-22. [PMID: 22865919]
 [3] Sites of ubiquitin attachment in Saccharomyces cerevisiae.
 Starita LM, Lo RS, Eng JK, von Haller PD, Fields S.
 Proteomics. 2012 Jan;12(2):236-40. [PMID: 22106047
Functional Description
 Needed for homotypic vacuole fusion, the last step in the vacuole inheritance process. 
Sequence Annotation
 NP_BIND 15 22 GTP (By similarity).
 NP_BIND 64 68 GTP (By similarity).
 NP_BIND 126 129 GTP (By similarity).
 MOTIF 37 45 Effector region (Probable).
 MOD_RES 208 208 Cysteine methyl ester (By similarity).
 LIPID 206 206 S-geranylgeranyl cysteine (By
 LIPID 208 208 S-geranylgeranyl cysteine (By  
Keyword
 3D-structure; Complete proteome; GTP-binding; Lipoprotein; Methylation; Nucleotide-binding; Prenylation; Protein transport; Reference proteome; Transport; Vacuole. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 208 AA 
Protein Sequence
MSSRKKNILK VIILGDSGVG KTSLMHRYVN DKYSQQYKAT IGADFLTKEV TVDGDKVATM 60
QVWDTAGQER FQSLGVAFYR GADCCVLVYD VTNASSFENI KSWRDEFLVH ANVNSPETFP 120
FVILGNKIDA EESKKIVSEK SAQELAKSLG DIPLFLTSAK NAINVDTAFE EIARSALQQN 180
QADTEAFEDD YNDAINIRLD GENNSCSC 208 
Gene Ontology
 GO:0000329; C:fungal-type vacuole membrane; IDA:SGD.
 GO:0005741; C:mitochondrial outer membrane; IDA:SGD.
 GO:0005525; F:GTP binding; IEA:UniProtKB-KW.
 GO:0003924; F:GTPase activity; IDA:SGD.
 GO:0006897; P:endocytosis; IMP:SGD.
 GO:0006896; P:Golgi to vacuole transport; TAS:SGD.
 GO:0034727; P:piecemeal microautophagy of nucleus; IMP:SGD.
 GO:0072665; P:protein localization to vacuole; IMP:SGD.
 GO:0015031; P:protein transport; IEA:UniProtKB-KW.
 GO:0032889; P:regulation of vacuole fusion, non-autophagic; IMP:SGD.
 GO:0042147; P:retrograde transport, endosome to Golgi; IPI:SGD.
 GO:0007264; P:small GTPase mediated signal transduction; IEA:InterPro.
 GO:0000011; P:vacuole inheritance; IDA:SGD. 
Interpro
 IPR027417; P-loop_NTPase.
 IPR005225; Small_GTP-bd_dom.
 IPR001806; Small_GTPase.
 IPR003579; Small_GTPase_Rab_type. 
Pfam
 PF00071; Ras 
SMART
 SM00175; RAB 
PROSITE
 PS51419; RAB 
PRINTS
 PR00449; RASTRNSFRMNG.