CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-040250
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 Lysine-specific histone demethylase 1B 
Protein Synonyms/Alias
  
Gene Name
 Kdm1b 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
272PLSEKKMKAINSLGAubiquitination[1]
Reference
 [1] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023] 
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 443 AA 
Protein Sequence
XGKALCVRPD VMELDELYEF PEYSRDPTMY LALRNLILAL WYTNCKEALT PQKCIPHIIV 60
RGLVRIRCVQ EVERILYFMT RKGLINTGVL TVAAGQHLLP KHYHNKSVLV VGAGPAGLAA 120
ARQLHNFGMK VTVLEAKDRI GGRVWDDKSF KGVVVGRGPQ IVNGCINNPV ALMCEQVSAR 180
SWDHNEFFAQ FAGDHTLLTP GYSTIIEKLA EGLDIRLKSP VQSIDYTGDE VQVTTTDGMG 240
HSAQKVLVTV PLAILQRGAI QFNPPLSEKK MKAINSLGAG IIEKIALQFP YRFWDSKVQG 300
ADFFGHVPPS ASQRGLFAVF YDMDSQQSVL MSVITGEAVA SLRTMDDKQV LQQCMGILRE 360
LFKEQEIPEP TKYFVTRWST EPWIQMAYSF VKTFGSGEAY DIIAEEIQGT VFFAGEATNR 420
HFPQTVTGAY LSGVREASKI AAF 443 
Gene Ontology
 GO:0005634; C:nucleus; IDA:MGI.
 GO:0003677; F:DNA binding; IEA:InterPro.
 GO:0050660; F:flavin adenine dinucleotide binding; IDA:MGI.
 GO:0034648; F:histone demethylase activity (H3-dimethyl-K4 specific); IDA:MGI.
 GO:0034649; F:histone demethylase activity (H3-monomethyl-K4 specific); IDA:MGI.
 GO:0016491; F:oxidoreductase activity; IEA:InterPro.
 GO:0008270; F:zinc ion binding; IDA:MGI.
 GO:0043046; P:DNA methylation involved in gamete generation; IMP:MGI.
 GO:0006349; P:regulation of gene expression by genetic imprinting; IMP:MGI. 
Interpro
 IPR002937; Amino_oxidase.
 IPR009057; Homeodomain-like.
 IPR016040; NAD(P)-bd_dom.
 IPR003042; Rng_hydrolase-like.
 IPR007526; SWIRM.
 IPR011991; WHTH_DNA-bd_dom. 
Pfam
 PF01593; Amino_oxidase
 PF04433; SWIRM 
SMART
  
PROSITE
 PS50934; SWIRM 
PRINTS
 PR00420; RNGMNOXGNASE.