CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-000792
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 EGF-like repeat and discoidin I-like domain-containing protein 3 
Protein Synonyms/Alias
 Developmentally-regulated endothelial cell locus 1 protein; Integrin-binding protein DEL1 
Gene Name
 EDIL3 
Gene Synonyms/Alias
 DEL1 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
244IGSPEYIKSYKIAYSubiquitination[1, 2, 3]
255IAYSNDGKTWAMYKVubiquitination[2]
Reference
 [1] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [2] Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass.
 Povlsen LK, Beli P, Wagner SA, Poulsen SL, Sylvestersen KB, Poulsen JW, Nielsen ML, Bekker-Jensen S, Mailand N, Choudhary C.
 Nat Cell Biol. 2012 Oct;14(10):1089-98. [PMID: 23000965]
 [3] hCKSAAP_UbSite: improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties.
 Chen Z, Zhou Y, Song J, Zhang Z.
 Biochim Biophys Acta. 2013 Aug;1834(8):1461-7. [PMID: 23603789
Functional Description
 Promotes adhesion of endothelial cells through interaction with the alpha-v/beta-3 integrin receptor. Inhibits formation of vascular-like structures. May be involved in regulation of vascular morphogenesis of remodeling in embryonic development. 
Sequence Annotation
 DOMAIN 22 60 EGF-like 1.
 DOMAIN 74 117 EGF-like 2.
 DOMAIN 119 155 EGF-like 3.
 DOMAIN 158 314 F5/8 type C 1.
 DOMAIN 319 476 F5/8 type C 2.
 MOTIF 96 98 Cell attachment site (Potential).
 DISULFID 26 37 By similarity.
 DISULFID 31 48 By similarity.
 DISULFID 50 59 By similarity.
 DISULFID 78 89 By similarity.
 DISULFID 83 105 By similarity.
 DISULFID 107 116 By similarity.
 DISULFID 123 134 By similarity.
 DISULFID 128 143 By similarity.
 DISULFID 145 154 By similarity.
 DISULFID 158 314 By similarity.
 DISULFID 301 305 By similarity.
 DISULFID 319 476 By similarity.  
Keyword
 3D-structure; Alternative splicing; Cell adhesion; Complete proteome; Developmental protein; Disulfide bond; EGF-like domain; Reference proteome; Repeat; Secreted; Signal. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 480 AA 
Protein Sequence
MKRSVAVWLL VGLSLGVPQF GKGDICDPNP CENGGICLPG LADGSFSCEC PDGFTDPNCS 60
SVVEVASDEE EPTSAGPCTP NPCHNGGTCE ISEAYRGDTF IGYVCKCPRG FNGIHCQHNI 120
NECEVEPCKN GGICTDLVAN YSCECPGEFM GRNCQYKCSG PLGIEGGIIS NQQITASSTH 180
RALFGLQKWY PYYARLNKKG LINAWTAAEN DRWPWIQINL QRKMRVTGVI TQGAKRIGSP 240
EYIKSYKIAY SNDGKTWAMY KVKGTNEDMV FRGNIDNNTP YANSFTPPIK AQYVRLYPQV 300
CRRHCTLRME LLGCELSGCS EPLGMKSGHI QDYQITASSI FRTLNMDMFT WEPRKARLDK 360
QGKVNAWTSG HNDQSQWLQV DLLVPTKVTG IITQGAKDFG HVQFVGSYKL AYSNDGEHWT 420
VYQDEKQRKD KVFQGNFDND THRKNVIDPP IYARHIRILP WSWYGRITLR SELLGCTEEE 480 
Gene Ontology
 GO:0070062; C:extracellular vesicular exosome; IDA:UniProtKB.
 GO:0005509; F:calcium ion binding; IEA:InterPro.
 GO:0005178; F:integrin binding; TAS:ProtInc.
 GO:0007155; P:cell adhesion; IEA:UniProtKB-KW.
 GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.
 GO:0010811; P:positive regulation of cell-substrate adhesion; IEA:Compara. 
Interpro
 IPR000421; Coagulation_fac_5/8-C_type_dom.
 IPR000742; EG-like_dom.
 IPR001881; EGF-like_Ca-bd.
 IPR013032; EGF-like_CS.
 IPR000152; EGF-type_Asp/Asn_hydroxyl_site.
 IPR018097; EGF_Ca-bd_CS.
 IPR008979; Galactose-bd-like. 
Pfam
 PF00008; EGF
 PF00754; F5_F8_type_C 
SMART
 SM00181; EGF
 SM00179; EGF_CA
 SM00231; FA58C 
PROSITE
 PS00010; ASX_HYDROXYL
 PS00022; EGF_1
 PS01186; EGF_2
 PS50026; EGF_3
 PS01187; EGF_CA
 PS01285; FA58C_1
 PS01286; FA58C_2
 PS50022; FA58C_3 
PRINTS