CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-032121
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Nucleolar GTP-binding protein 1 
Protein Synonyms/Alias
  
Gene Name
 GTPBP4 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
56LGQINIAKNLVDNVAubiquitination[1, 2, 3]
64NLVDNVAKDYVRLMKubiquitination[2, 3]
71KDYVRLMKYGDSLYRubiquitination[1, 3]
Reference
 [1] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [2] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [3] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961
Functional Description
 Involved in the biogenesis of the 60S ribosomal subunit (By similarity). 
Sequence Annotation
  
Keyword
 Complete proteome; GTP-binding; Nucleotide-binding; Nucleus; Reference proteome; Ribosome biogenesis. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 587 AA 
Protein Sequence
MRKVKFTQQN YHDRLSQILT DFPKLDDIHP FYADLMNILY DKDHYKLALG QINIAKNLVD 60
NVAKDYVRLM KYGDSLYRCK QLKRAALGRM CTVIKRQKQS LEYLEQVRQH LSRLPTIDPN 120
TRTLLLCGYP NVGKSSFINK VTRADVDVQP YAFTTKSLFV GHMDYKYLRW QVVDTPGILD 180
HPLEDRNTIE MQAITALAHL RAAVLYVMDL SEQCGHGLRE QLELFQNIRP LFINKPLIVV 240
ANKCDVKRIA ELSEDDQKIF TDLQSEGFPV IETSTLTEEG VIKVKTEACD RLLAHRVETK 300
MKGNKVNEVL NRLHLAIPTR RDDKERPPFI PEGVVARRKR METEESRKKR ERDLELEMGD 360
DYILDLQKYW DLMNLSEKHD KIPEIWEGHN IADYIDPAIM KKLEELEKEE ELRTAAGEYD 420
SVSESEDEEM LEIRQLAKQI REKKKLKILE SKEKNTQGPR MPRTAKKVQR TVLEKEMRSL 480
GVDMDDKDDA HYAVQARRSR SITRKRKRED SAPPSSVARS GSCSRTPRDV SGLRDVKMVK 540
KAKTMMKNAQ KKMNRLGKKG EADRHVFDMK PKHLLSGKRK AGKKDRR 587 
Gene Ontology
 GO:0005794; C:Golgi apparatus; IDA:HPA.
 GO:0031965; C:nuclear membrane; IDA:HPA.
 GO:0005730; C:nucleolus; IDA:HPA.
 GO:0005525; F:GTP binding; IEA:UniProtKB-KW.
 GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW. 
Interpro
 IPR006073; GTP_binding_domain.
 IPR024926; NOG1.
 IPR010674; NOG1_Rossman_fold_dom.
 IPR012973; NOG_C.
 IPR027417; P-loop_NTPase.
 IPR005225; Small_GTP-bd_dom. 
Pfam
 PF06858; NOG1
 PF08155; NOGCT 
SMART
  
PROSITE
  
PRINTS
 PR00326; GTP1OBG.