CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-009304
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 NEDD8-conjugating enzyme Ubc12 
Protein Synonyms/Alias
 NEDD8 carrier protein; NEDD8 protein ligase; Ubiquitin-conjugating enzyme E2 M 
Gene Name
 Ube2m 
Gene Synonyms/Alias
 Ubc-rs2; Ubc12 
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
3*****MIKLFSLKQQacetylation[1]
3*****MIKLFSLKQQubiquitination[2]
8MIKLFSLKQQKKEEEacetylation[1]
8MIKLFSLKQQKKEEEubiquitination[2]
36AAQLRIQKDINELNLubiquitination[2]
72CPDEGFYKSGKFVFSubiquitination[2]
75EGFYKSGKFVFSFKVubiquitination[2]
Reference
 [1] Quantitative acetylome analysis reveals the roles of SIRT1 in regulating diverse substrates and cellular pathways.
 Chen Y, Zhao W, Yang JS, Cheng Z, Luo H, Lu Z, Tan M, Gu W, Zhao Y.
 Mol Cell Proteomics. 2012 Oct;11(10):1048-62. [PMID: 22826441]
 [2] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023
Functional Description
 Accepts the ubiquitin-like protein NEDD8 from the UBA3- NAE1 E1 complex and catalyzes its covalent attachment to other proteins. The specific interaction with the E3 ubiquitin ligase RBX1, but not RBX2, suggests that the RBX1-UBE2M complex neddylates specific target proteins, such as CUL1, CUL2, CUL3 and CUL4. Involved in cell proliferation (By similarity). 
Sequence Annotation
 REGION 1 26 Interaction with UBA3 (By similarity).
 REGION 27 57 Interaction with UBA3 (By similarity).
 ACT_SITE 111 111 Glycyl thioester intermediate (By
 MOD_RES 1 1 N-acetylmethionine (By similarity).
 MOD_RES 3 3 N6-acetyllysine (By similarity).
 MOD_RES 50 50 Phosphoserine (By similarity).  
Keyword
 Acetylation; ATP-binding; Complete proteome; Ligase; Nucleotide-binding; Phosphoprotein; Reference proteome; Ubl conjugation pathway. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 183 AA 
Protein Sequence
MIKLFSLKQQ KKEEESAGGT KGSSKKASAA QLRIQKDINE LNLPKTCDIS FSDPDDLLNF 60
KLVICPDEGF YKSGKFVFSF KVGQGYPHDP PKVKCETMVY HPNIDLEGNV CLNILREDWK 120
PVLTINSIIY GLQYLFLEPN PEDPLNKEAA EVLQNNRRLF EQNVQRSMRG GYIGSTYFER 180
CLK 183 
Gene Ontology
 GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
 GO:0019788; F:NEDD8 ligase activity; ISS:UniProtKB.
 GO:0018169; F:ribosomal S6-glutamic acid ligase activity; ISS:UniProtKB.
 GO:0004842; F:ubiquitin-protein ligase activity; ISS:UniProtKB.
 GO:0043525; P:positive regulation of neuron apoptotic process; IEA:Compara.
 GO:0045116; P:protein neddylation; ISS:UniProtKB. 
Interpro
 IPR000608; UBQ-conjugat_E2.
 IPR023313; UBQ-conjugating_AS.
 IPR016135; UBQ-conjugating_enzyme/RWD. 
Pfam
 PF00179; UQ_con 
SMART
  
PROSITE
 PS00183; UBIQUITIN_CONJUGAT_1
 PS50127; UBIQUITIN_CONJUGAT_2 
PRINTS