CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-005799
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 NEDD8 
Protein Synonyms/Alias
 Neddylin; Neural precursor cell expressed developmentally down-regulated protein 8; NEDD-8; Ubiquitin-like protein Nedd8 
Gene Name
 Nedd8 
Gene Synonyms/Alias
 Nedd-8 
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
6**MLIKVKTLTGKEIubiquitination[1]
11KVKTLTGKEIEIDIEubiquitination[1]
22IDIEPTDKVERIKERacetylation[2]
22IDIEPTDKVERIKERubiquitination[1]
33IKERVEEKEGIPPQQubiquitination[1]
48QRLIYSGKQMNDEKTacetylation[2, 3, 4]
48QRLIYSGKQMNDEKTubiquitination[1]
54GKQMNDEKTAADYKIacetylation[4]
54GKQMNDEKTAADYKIubiquitination[1]
Reference
 [1] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023]
 [2] Quantitative acetylome analysis reveals the roles of SIRT1 in regulating diverse substrates and cellular pathways.
 Chen Y, Zhao W, Yang JS, Cheng Z, Luo H, Lu Z, Tan M, Gu W, Zhao Y.
 Mol Cell Proteomics. 2012 Oct;11(10):1048-62. [PMID: 22826441]
 [3] Proteomic investigations of lysine acetylation identify diverse substrates of mitochondrial deacetylase sirt3.
 Sol EM, Wagner SA, Weinert BT, Kumar A, Kim HS, Deng CX, Choudhary C.
 PLoS One. 2012;7(12):e50545. [PMID: 23236377]
 [4] SIRT5-Mediated Lysine Desuccinylation Impacts Diverse Metabolic Pathways.
 Park J, Chen Y, Tishkoff DX, Peng C, Tan M, Dai L, Xie Z, Zhang Y, Zwaans BM, Skinner ME, Lombard DB, Zhao Y.
 Mol Cell. 2013 Jun 27;50(6):919-30. [PMID: 23806337
Functional Description
 Ubiquitin-like protein which plays an important role in cell cycle control and embryogenesis. Covalent attachment to its substrates requires prior activation by the E1 complex UBE1C- APPBP1 and linkage to the E2 enzyme UBE2M. Attachment of NEDD8 to cullins activates their associated E3 ubiquitin ligase activity, and thus promotes polyubiquitination and proteasomal degradation of cyclins and other regulatory proteins. 
Sequence Annotation
 REGION 70 72 Interaction with UBE1C (By similarity).
 CROSSLNK 76 76 Glycyl lysine isopeptide (Gly-Lys)  
Keyword
 Complete proteome; Isopeptide bond; Nucleus; Reference proteome; Ubl conjugation pathway. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 81 AA 
Protein Sequence
MLIKVKTLTG KEIEIDIEPT DKVERIKERV EEKEGIPPQQ QRLIYSGKQM NDEKTAADYK 60
ILGGSVLHLV LALRGGGGLG Q 81 
Gene Ontology
 GO:0005634; C:nucleus; IDA:MGI.
 GO:0008104; P:protein localization; IDA:MGI.
 GO:0045116; P:protein neddylation; ISA:MGI.
 GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IDA:MGI.
 GO:0014070; P:response to organic cyclic compound; IEA:Compara. 
Interpro
 IPR000626; Ubiquitin.
 IPR019954; Ubiquitin_CS.
 IPR019956; Ubiquitin_subgr.
 IPR019955; Ubiquitin_supergroup. 
Pfam
 PF00240; ubiquitin 
SMART
 SM00213; UBQ 
PROSITE
 PS00299; UBIQUITIN_1
 PS50053; UBIQUITIN_2 
PRINTS
 PR00348; UBIQUITIN.