CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-002681
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Hepatocyte growth factor receptor 
Protein Synonyms/Alias
 HGF receptor; HGF/SF receptor; Proto-oncogene c-Met; Scatter factor receptor; SF receptor; Tyrosine-protein kinase Met 
Gene Name
 MET 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
977FLWLKKRKQIKDLGSubiquitination[1]
980LKKRKQIKDLGSELVubiquitination[1, 2, 3]
1179LVVLPYMKHGDLRNFubiquitination[1]
1197ETHNPTVKDLIGFGLubiquitination[1]
1208GFGLQVAKGMKYLASubiquitination[1]
1211LQVAKGMKYLASKKFubiquitination[1]
1237LDEKFTVKVADFGLAubiquitination[1]
1250LARDMYDKEYYSVHNubiquitination[1]
1258EYYSVHNKTGAKLPVubiquitination[1]
1266TGAKLPVKWMALESLubiquitination[1]
Reference
 [1] Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
 Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW.
 Nature. 2013 Apr 18;496(7445):372-6. [PMID: 23503661]
 [2] Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass.
 Povlsen LK, Beli P, Wagner SA, Poulsen SL, Sylvestersen KB, Poulsen JW, Nielsen ML, Bekker-Jensen S, Mailand N, Choudhary C.
 Nat Cell Biol. 2012 Oct;14(10):1089-98. [PMID: 23000965]
 [3] hCKSAAP_UbSite: improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties.
 Chen Z, Zhou Y, Song J, Zhang Z.
 Biochim Biophys Acta. 2013 Aug;1834(8):1461-7. [PMID: 23603789
Functional Description
 Receptor tyrosine kinase that transduces signals from the extracellular matrix into the cytoplasm by binding to hepatocyte growth factor/HGF ligand. Regulates many physiological processes including proliferation, scattering, morphogenesis and survival. Ligand binding at the cell surface induces autophosphorylation of MET on its intracellular domain that provides docking sites for downstream signaling molecules. Following activation by ligand, interacts with the PI3-kinase subunit PIK3R1, PLCG1, SRC, GRB2, STAT3 or the adapter GAB1. Recruitment of these downstream effectors by MET leads to the activation of several signaling cascades including the RAS-ERK, PI3 kinase-AKT, or PLCgamma-PKC. The RAS-ERK activation is associated with the morphogenetic effects while PI3K/AKT coordinates prosurvival effects. During embryonic development, MET signaling plays a role in gastrulation, development and migration of muscles and neuronal precursors, angiogenesis and kidney formation. In adults, participates in wound healing as well as organ regeneration and tissue remodeling. Promotes also differentiation and proliferation of hematopoietic cells. 
Sequence Annotation
 DOMAIN 27 515 Sema.
 DOMAIN 563 655 IPT/TIG 1.
 DOMAIN 657 739 IPT/TIG 2.
 DOMAIN 742 836 IPT/TIG 3.
 DOMAIN 1078 1345 Protein kinase.
 NP_BIND 1084 1092 ATP (By similarity).
 REGION 1212 1390 Interaction with RANBP9.
 REGION 1320 1359 Interaction with MUC20.
 ACT_SITE 1204 1204 Proton acceptor (By similarity).
 BINDING 1110 1110 ATP.
 MOD_RES 977 977 Phosphothreonine.
 MOD_RES 990 990 Phosphoserine.
 MOD_RES 997 997 Phosphoserine.
 MOD_RES 1000 1000 Phosphoserine.
 MOD_RES 1003 1003 Phosphotyrosine.
 MOD_RES 1230 1230 Phosphotyrosine.
 MOD_RES 1234 1234 Phosphotyrosine; by autocatalysis.
 MOD_RES 1235 1235 Phosphotyrosine; by autocatalysis.
 MOD_RES 1289 1289 Phosphothreonine.
 MOD_RES 1349 1349 Phosphotyrosine; by autocatalysis.
 MOD_RES 1356 1356 Phosphotyrosine; by autocatalysis.
 MOD_RES 1365 1365 Phosphotyrosine.
 CARBOHYD 45 45 N-linked (GlcNAc...) (Potential).
 CARBOHYD 106 106 N-linked (GlcNAc...).
 CARBOHYD 149 149 N-linked (GlcNAc...) (Potential).
 CARBOHYD 202 202 N-linked (GlcNAc...) (Potential).
 CARBOHYD 399 399 N-linked (GlcNAc...) (Potential).
 CARBOHYD 405 405 N-linked (GlcNAc...) (Potential).
 CARBOHYD 607 607 N-linked (GlcNAc...) (Potential).
 CARBOHYD 635 635 N-linked (GlcNAc...) (Potential).
 CARBOHYD 785 785 N-linked (GlcNAc...) (Potential).
 CARBOHYD 879 879 N-linked (GlcNAc...) (Potential).
 CARBOHYD 930 930 N-linked (GlcNAc...) (Potential).
 DISULFID 95 101
 DISULFID 98 160
 DISULFID 133 141
 DISULFID 172 175
 DISULFID 298 363
 DISULFID 385 397
 DISULFID 520 538
 DISULFID 526 561
 DISULFID 529 545
 DISULFID 541 551  
Keyword
 3D-structure; Alternative splicing; ATP-binding; Chromosomal rearrangement; Complete proteome; Disease mutation; Disulfide bond; Glycoprotein; Kinase; Membrane; Nucleotide-binding; Phosphoprotein; Polymorphism; Proto-oncogene; Receptor; Reference proteome; Repeat; Secreted; Signal; Transferase; Transmembrane; Transmembrane helix; Tyrosine-protein kinase; Ubl conjugation. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 1390 AA 
Protein Sequence
MKAPAVLAPG ILVLLFTLVQ RSNGECKEAL AKSEMNVNMK YQLPNFTAET PIQNVILHEH 60
HIFLGATNYI YVLNEEDLQK VAEYKTGPVL EHPDCFPCQD CSSKANLSGG VWKDNINMAL 120
VVDTYYDDQL ISCGSVNRGT CQRHVFPHNH TADIQSEVHC IFSPQIEEPS QCPDCVVSAL 180
GAKVLSSVKD RFINFFVGNT INSSYFPDHP LHSISVRRLK ETKDGFMFLT DQSYIDVLPE 240
FRDSYPIKYV HAFESNNFIY FLTVQRETLD AQTFHTRIIR FCSINSGLHS YMEMPLECIL 300
TEKRKKRSTK KEVFNILQAA YVSKPGAQLA RQIGASLNDD ILFGVFAQSK PDSAEPMDRS 360
AMCAFPIKYV NDFFNKIVNK NNVRCLQHFY GPNHEHCFNR TLLRNSSGCE ARRDEYRTEF 420
TTALQRVDLF MGQFSEVLLT SISTFIKGDL TIANLGTSEG RFMQVVVSRS GPSTPHVNFL 480
LDSHPVSPEV IVEHTLNQNG YTLVITGKKI TKIPLNGLGC RHFQSCSQCL SAPPFVQCGW 540
CHDKCVRSEE CLSGTWTQQI CLPAIYKVFP NSAPLEGGTR LTICGWDFGF RRNNKFDLKK 600
TRVLLGNESC TLTLSESTMN TLKCTVGPAM NKHFNMSIII SNGHGTTQYS TFSYVDPVIT 660
SISPKYGPMA GGTLLTLTGN YLNSGNSRHI SIGGKTCTLK SVSNSILECY TPAQTISTEF 720
AVKLKIDLAN RETSIFSYRE DPIVYEIHPT KSFISTWWKE PLNIVSFLFC FASGGSTITG 780
VGKNLNSVSV PRMVINVHEA GRNFTVACQH RSNSEIICCT TPSLQQLNLQ LPLKTKAFFM 840
LDGILSKYFD LIYVHNPVFK PFEKPVMISM GNENVLEIKG NDIDPEAVKG EVLKVGNKSC 900
ENIHLHSEAV LCTVPNDLLK LNSELNIEWK QAISSTVLGK VIVQPDQNFT GLIAGVVSIS 960
TALLLLLGFF LWLKKRKQIK DLGSELVRYD ARVHTPHLDR LVSARSVSPT TEMVSNESVD 1020
YRATFPEDQF PNSSQNGSCR QVQYPLTDMS PILTSGDSDI SSPLLQNTVH IDLSALNPEL 1080
VQAVQHVVIG PSSLIVHFNE VIGRGHFGCV YHGTLLDNDG KKIHCAVKSL NRITDIGEVS 1140
QFLTEGIIMK DFSHPNVLSL LGICLRSEGS PLVVLPYMKH GDLRNFIRNE THNPTVKDLI 1200
GFGLQVAKGM KYLASKKFVH RDLAARNCML DEKFTVKVAD FGLARDMYDK EYYSVHNKTG 1260
AKLPVKWMAL ESLQTQKFTT KSDVWSFGVL LWELMTRGAP PYPDVNTFDI TVYLLQGRRL 1320
LQPEYCPDPL YEVMLKCWHP KAEMRPSFSE LVSRISAIFS TFIGEHYVHV NATYVNVKCV 1380
APYPSLLSSE DNADDEVDTR PASFWETS 1408 
Gene Ontology
 GO:0009925; C:basal plasma membrane; IDA:MGI.
 GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell.
 GO:0005887; C:integral to plasma membrane; TAS:ProtInc.
 GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
 GO:0005008; F:hepatocyte growth factor-activated receptor activity; TAS:ProtInc.
 GO:0000187; P:activation of MAPK activity; IEA:Compara.
 GO:0030534; P:adult behavior; IEA:Compara.
 GO:0007411; P:axon guidance; TAS:Reactome.
 GO:0007420; P:brain development; IEA:Compara.
 GO:0048754; P:branching morphogenesis of an epithelial tube; IMP:UniProtKB.
 GO:0008283; P:cell proliferation; TAS:ProtInc.
 GO:0042593; P:glucose homeostasis; IEA:Compara.
 GO:0001889; P:liver development; IEA:Compara.
 GO:0014812; P:muscle cell migration; IEA:Compara.
 GO:0051450; P:myoblast proliferation; IEA:Compara.
 GO:0014902; P:myotube differentiation; IEA:Compara.
 GO:1901299; P:negative regulation of hydrogen peroxide-mediated programmed cell death; IMP:BHF-UCL.
 GO:0001890; P:placenta development; IEA:Compara.
 GO:0010828; P:positive regulation of glucose transport; IEA:Compara.
 GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:BHF-UCL.
 GO:0046777; P:protein autophosphorylation; IEA:Compara.
 GO:0060665; P:regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling; IEA:Compara. 
Interpro
 IPR013783; Ig-like_fold.
 IPR014756; Ig_E-set.
 IPR002909; IPT_TIG_rcpt.
 IPR011009; Kinase-like_dom.
 IPR003659; Plexin-like.
 IPR016201; Plexin-like_fold.
 IPR002165; Plexin_repeat.
 IPR000719; Prot_kinase_cat_dom.
 IPR017441; Protein_kinase_ATP_BS.
 IPR001627; Semaphorin/CD100_Ag.
 IPR001245; Ser-Thr/Tyr_kinase_cat_dom.
 IPR008266; Tyr_kinase_AS.
 IPR020635; Tyr_kinase_cat_dom.
 IPR016244; Tyr_kinase_HGF/MSP_rcpt.
 IPR015943; WD40/YVTN_repeat-like_dom. 
Pfam
 PF07714; Pkinase_Tyr
 PF01437; PSI
 PF01403; Sema
 PF01833; TIG 
SMART
 SM00429; IPT
 SM00423; PSI
 SM00630; Sema
 SM00219; TyrKc 
PROSITE
 PS00107; PROTEIN_KINASE_ATP
 PS50011; PROTEIN_KINASE_DOM
 PS00109; PROTEIN_KINASE_TYR
 PS51004; SEMA 
PRINTS
 PR00109; TYRKINASE.