CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-032088
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Protein YIPF1 
Protein Synonyms/Alias
 cDNA FLJ54858, highly similar to Protein YIPF1 
Gene Name
 YIPF1 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
88LGNDDSDKTELLAGQubiquitination[1, 2]
96TELLAGQKKSSPFWTubiquitination[3]
123YQVFDRIKGSLLPIPubiquitination[4]
132SLLPIPGKNFVRLYIubiquitination[1, 2, 4, 5, 6]
Reference
 [1] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [2] hCKSAAP_UbSite: improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties.
 Chen Z, Zhou Y, Song J, Zhang Z.
 Biochim Biophys Acta. 2013 Aug;1834(8):1461-7. [PMID: 23603789]
 [3] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [4] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [5] Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass.
 Povlsen LK, Beli P, Wagner SA, Poulsen SL, Sylvestersen KB, Poulsen JW, Nielsen ML, Bekker-Jensen S, Mailand N, Choudhary C.
 Nat Cell Biol. 2012 Oct;14(10):1089-98. [PMID: 23000965]
 [6] Integrated proteomic analysis of post-translational modifications by serial enrichment.
 Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA.
 Nat Methods. 2013 Jul;10(7):634-7. [PMID: 23749302
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 331 AA 
Protein Sequence
MSGGEISSRT LQIFFLIIGR RLTGRMAAVD DLQFEEFGNA ATSLTANPDA TTVNIEDPGE 60
TPKHQPGSPR GSGREEDDEL LGNDDSDKTE LLAGQKKSSP FWTFEYYQTF FDVDTYQVFD 120
RIKGSLLPIP GKNFVRLYIR SNPDLYGPFW ICATLVFAIA ISGNLSNFLI HLGEKTYHYV 180
PEFRKVSIAA TIIYAYAWLV PLALWGFLMW RNSKVMNIVS YSFLEIVCVY GYSLFIYIPT 240
AILWIIPQKA VRWILVMIAL GISGSLLAMT FWPAVREDNR RVALATIVTI VLLHMLLSVG 300
CLAYFFDAPE MDHLPTTTAT PNQTVAAAKS S 331 
Gene Ontology
 GO:0016020; C:membrane; IEA:InterPro. 
Interpro
 IPR006977; Yip1. 
Pfam
 PF04893; Yip1 
SMART
  
PROSITE
  
PRINTS