CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-037272
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 DNA-directed RNA polymerase II subunit RPB4 
Protein Synonyms/Alias
  
Gene Name
 POLR2D 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
99ILDDIQTKRSFQY**ubiquitination[1, 2]
Reference
 [1] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [2] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 104 AA 
Protein Sequence
MLLEHRKQQN ESAEDEQELS EVFMKTLNYT ARFSRFKNRE TIASVRSLLL QKKLHKFELA 60
CLANLCPETA EESKALIPSL EGRFEDEELQ QILDDIQTKR SFQY 104 
Gene Ontology
 GO:0003899; F:DNA-directed RNA polymerase activity; IEA:InterPro.
 GO:0000166; F:nucleotide binding; IEA:InterPro.
 GO:0006351; P:transcription, DNA-dependent; IEA:InterPro. 
Interpro
 IPR010997; HRDC-like.
 IPR005574; RNA_pol_II_Rpb4.
 IPR006590; RNA_pol_II_Rpb4_core. 
Pfam
 PF03874; RNA_pol_Rpb4 
SMART
 SM00657; RPOL4c 
PROSITE
  
PRINTS