CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-042709
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 Trafficking protein particle complex subunit 9 
Protein Synonyms/Alias
  
Gene Name
 TRAPPC9 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
27ATDKSGDKIPLLCVPubiquitination[1]
159STEIGRAKNCLSPEDubiquitination[2]
290YSLSLDPKDFSRGTHubiquitination[1, 3]
402SLRPHKMKSLLGQNVubiquitination[1, 3]
412LGQNVSTKSPFIYSPubiquitination[1, 2, 4]
598EKLEVTSKVLTTKEKubiquitination[5]
605KVLTTKEKLYGDFLSubiquitination[1]
679VRPRVEGKPVNPPESubiquitination[1, 2]
688VNPPESNKAGDYSHVubiquitination[1]
788RMAIQVDKFNFESFPubiquitination[1, 3]
801FPESPGEKGQFANPKubiquitination[3, 4]
808KGQFANPKQLEEERRubiquitination[1, 2]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [2] Integrated proteomic analysis of post-translational modifications by serial enrichment.
 Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA.
 Nat Methods. 2013 Jul;10(7):634-7. [PMID: 23749302]
 [3] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [4] Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
 Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW.
 Nature. 2013 Apr 18;496(7445):372-6. [PMID: 23503661]
 [5] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 992 AA 
Protein Sequence
XEDFIESLFI VLESKRLDRA TDKSGDKIPL LCVPFEKKDF VGLDTDSRHY KKRCQGRMRK 60
HVGDLCLQAG MLQDSLVHYH MSVELLRSVN DFLWLGAALE GLCSASVIYH YPGGTGGKSG 120
ARRFQGSTLP AEAANRHRPG ALTTNGINPD TSTEIGRAKN CLSPEDIIDK YKEAISYYSK 180
YKNAGVIELE ACIKAVRVLA IQKRSMEASE FLQNAVYINL RQLSEEEKIQ RYSILSELYE 240
LIGFHRKSAF FKRVAAMQCV APSIAEPGWR ACYKLLLETL PGYSLSLDPK DFSRGTHRGW 300
AAVQMRLLHE LVYASRRMGN PALSVRHLSF LLQTMLDFLS DQEKKDVAQS LENYTSKCPG 360
TMEPIALPGG LTLPPVPFTK LPIVRHVKLL NLPASLRPHK MKSLLGQNVS TKSPFIYSPI 420
IAHNRGEERN KKIDFQWVQG DVCEVQLMVY NPMPFELRVE NMGLLTSGVE FESLPAALSL 480
PAESGLYPVT LVGVPQTTGT ITVNGYHTTV FGVFSDCLLD NLPGIKTSGS TVEVIPALPR 540
LQISTSLPRS AHSLQPSSGD EISTNVSVQL YNGESQQLII KLENIGMEPL EKLEVTSKVL 600
TTKEKLYGDF LSWKLEETLA QFPLQPGKVA TFTINIKVKL DFSCQENLLQ DLSDDGISVS 660
GFPLSSPFRQ VVRPRVEGKP VNPPESNKAG DYSHVKTLEA VLNFKYSGGP GHTEGYYRNL 720
SLGLHVEVEP SVFFTRVSTL PATSTRQCHL LLDVFNSTEH ELTVSTRSSE ALILHAGECQ 780
RMAIQVDKFN FESFPESPGE KGQFANPKQL EEERREARGL EIHSKLGICW RIPSLKRSGE 840
ASVEGLLNQL VLEHLQLAPL QWDVLVDGQP CDREAVAACQ VGDPVRLEVR LTNRSPRSVG 900
PFALTVVPFQ DHQNGVHNYD LHDTVSFVGS STFYLDAVQP SGQSACLGAL LFLYTGDFFL 960
HIRFHEDSTS KELPPSWFCL PSVHVCALEA QA 992 
Gene Ontology
  
Interpro
 IPR013935; TRAPP_II_complex_Trs120. 
Pfam
 PF08626; TRAPPC9-Trs120 
SMART
  
PROSITE
  
PRINTS