CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-010475
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating 
Protein Synonyms/Alias
 GNTZII 
Gene Name
 gndA 
Gene Synonyms/Alias
 yqjI; BSU23860 
Created Date
 July 27, 2013 
Organism
 Bacillus subtilis (strain 168) 
NCBI Taxa ID
 224308 
Lysine Modification
Position
Peptide
Type
References
93SLLPHLEKDDILIDGacetylation[1]
106DGGNTYYKDTQRRNKacetylation[1]
309LLSGPEVKPVTENKEacetylation[1]
459HTYERTDKEGIFHTEacetylation[1]
Reference
 [1] The acetylproteome of Gram-positive model bacterium Bacillus subtilis.
 Kim D, Yu BJ, Kim JA, Lee YJ, Choi SG, Kang S, Pan JG.
 Proteomics. 2013 May;13(10-11):1726-36. [PMID: 23468065
Functional Description
 Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Is the predominant 6-P- gluconate dehydrogenase isoenzyme in B.subtilis during growth on glucose and gluconate. 
Sequence Annotation
 NP_BIND 10 15 NADP (By similarity).
 NP_BIND 33 35 NADP (By similarity).
 NP_BIND 74 76 NADP (By similarity).
 REGION 128 130 Substrate binding (By similarity).
 REGION 185 186 Substrate binding (By similarity).
 ACT_SITE 182 182 Proton acceptor (By similarity).
 ACT_SITE 189 189 Proton donor (By similarity).
 BINDING 102 102 NADP (By similarity).
 BINDING 102 102 Substrate (By similarity).
 BINDING 190 190 Substrate (By similarity).
 BINDING 260 260 Substrate; via amide nitrogen (By
 BINDING 287 287 Substrate (By similarity).
 BINDING 446 446 Substrate; shared with dimeric partner
 BINDING 452 452 Substrate; shared with dimeric partner  
Keyword
 Complete proteome; Direct protein sequencing; Gluconate utilization; NADP; Oxidoreductase; Pentose shunt; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 469 AA 
Protein Sequence
MSKQQIGVIG LAVMGKNLAL NIESRGFSVS VYNRSSSKTE EFLQEAKGKN VVGTYSIEEF 60
VQSLETPRKI LLMVKAGTAT DATIQSLLPH LEKDDILIDG GNTYYKDTQR RNKELAESGI 120
HFIGTGVSGG EEGALKGPSI MPGGQKEAHE LVKPILEAIS AKVDGEPCTT YIGPDGAGHY 180
VKMVHNGIEY GDMQLISESY FILKQVLGLS ADELHEVFAE WNKGELDSYL IEITADIFTK 240
KDEETGKPLV DVILDKAGQK GTGKWTSQSA LDLGVPLPII TESVFARFIS AMKEERVKAS 300
GLLSGPEVKP VTENKEELIE AVRKALFMSK ICSYAQGFAQ MKAASEEYNW DLKYGEIAMI 360
FRGGCIIRAA FLQKIKEAYD REPELDNLLL DSYFKNIVES YQGALRQVIS LAVAQGVPVP 420
SFSSALAYYD SYRTAVLPAN LIQAQRDYFG AHTYERTDKE GIFHTEWMK 469 
Gene Ontology
 GO:0050661; F:NADP binding; IEA:InterPro.
 GO:0004616; F:phosphogluconate dehydrogenase (decarboxylating) activity; IEA:EC.
 GO:0019521; P:D-gluconate metabolic process; IEA:UniProtKB-KW.
 GO:0006098; P:pentose-phosphate shunt; IEA:UniProtKB-UniPathway. 
Interpro
 IPR008927; 6-PGluconate_DH_C-like.
 IPR006114; 6PGDH_C.
 IPR006113; 6PGDH_decarbox.
 IPR006115; 6PGDH_NADP-bd.
 IPR006184; 6PGdom_BS.
 IPR013328; DH_multihelical.
 IPR012284; Fibritin/6PGD_C-extension.
 IPR016040; NAD(P)-bd_dom. 
Pfam
 PF00393; 6PGD
 PF03446; NAD_binding_2 
SMART
  
PROSITE
 PS00461; 6PGD 
PRINTS