CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-023546
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Nucleoside diphosphate kinase 3 
Protein Synonyms/Alias
 NDK 3; NDP kinase 3; DR-nm23; Nucleoside diphosphate kinase C; NDPKC; nm23-M3 
Gene Name
 Nme3 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
29ERTFLAVKPDGVQRRubiquitination[1]
75HYVELREKPFYSRLVubiquitination[1]
Reference
 [1] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023
Functional Description
 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. Probably has a role in normal hematopoiesis by inhibition of granulocyte differentiation and induction of apoptosis (By similarity). 
Sequence Annotation
 ACT_SITE 135 135 Pros-phosphohistidine intermediate (By
 BINDING 29 29 ATP (By similarity).
 BINDING 77 77 ATP (By similarity).
 BINDING 105 105 ATP (By similarity).
 BINDING 111 111 ATP (By similarity).
 BINDING 122 122 ATP (By similarity).
 BINDING 132 132 ATP (By similarity).  
Keyword
 ATP-binding; Complete proteome; Kinase; Magnesium; Metal-binding; Nucleotide metabolism; Nucleotide-binding; Reference proteome; Transferase. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 169 AA 
Protein Sequence
MICLVLTIFA NLFPSAYSGV NERTFLAVKP DGVQRRLVGE IVRRFERKGF KLVALKLVQA 60
SEELLREHYV ELREKPFYSR LVKYMSSGPV VAMVWQGLDV VHASRALIGA TDPGDAMPGT 120
IRGDFCMEVG KNVIHGSDSV ESAHREIALW FREAELLCWE DSAGHWLYE 169 
Gene Ontology
 GO:0005739; C:mitochondrion; IDA:MGI.
 GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
 GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
 GO:0004550; F:nucleoside diphosphate kinase activity; IEA:EC.
 GO:0006241; P:CTP biosynthetic process; IEA:InterPro.
 GO:0006183; P:GTP biosynthetic process; IEA:InterPro.
 GO:0006228; P:UTP biosynthetic process; IEA:InterPro. 
Interpro
 IPR001564; Nucleoside_diP_kinase.
 IPR023005; Nucleoside_diP_kinase_AS. 
Pfam
 PF00334; NDK 
SMART
 SM00562; NDK 
PROSITE
 PS00469; NDP_KINASES 
PRINTS
 PR01243; NUCDPKINASE.