CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-023935
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Melanoma-associated antigen D1 
Protein Synonyms/Alias
 MAGE tumor antigen CCF; MAGE-D1 antigen; Neurotrophin receptor-interacting MAGE homolog 
Gene Name
 MAGED1 
Gene Synonyms/Alias
 NRAGE; PP2250; PRO2292 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
135ARPKSAFKVQNATTKubiquitination[1]
142KVQNATTKGPNGVYDubiquitination[1, 2, 3]
157FSQAHNAKDVPNTQPubiquitination[1, 3]
165DVPNTQPKAAFKSQNubiquitination[1]
169TQPKAAFKSQNATPKubiquitination[1]
176KSQNATPKGPNAAYDubiquitination[1]
197TGELAANKSEMAFKAubiquitination[1]
203NKSEMAFKAQNATTKubiquitination[1, 2, 4]
210KAQNATTKVGPNATYubiquitination[1, 3, 4, 5]
234DLANSRPKTPFKAWNubiquitination[1, 3, 5]
238SRPKTPFKAWNDTTKubiquitination[1, 2, 3, 4]
245KAWNDTTKAPTADTQubiquitination[1, 2, 3, 5]
307IRGKRTRKINNLNVEubiquitination[1, 2, 5]
536ERANKLVKYLMLKDYubiquitination[1, 2, 3, 4, 5]
541LVKYLMLKDYTKVPIubiquitination[1, 2, 4]
545LMLKDYTKVPIKRSEubiquitination[1]
549DYTKVPIKRSEMLRDubiquitination[1, 2]
578RACFVLEKKFGIQLKubiquitination[1, 2]
579ACFVLEKKFGIQLKEubiquitination[1, 3]
661PLLGDLRKLLTYEFVubiquitination[1, 2, 3, 4, 5]
669LLTYEFVKQKYLDYRubiquitination[1, 2, 5]
671TYEFVKQKYLDYRRVubiquitination[1, 3]
712RFIAEVQKRDPRDWTubiquitination[1, 2, 3, 4, 5]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [2] Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition.
 Udeshi ND, Mani DR, Eisenhaure T, Mertins P, Jaffe JD, Clauser KR, Hacohen N, Carr SA.
 Mol Cell Proteomics. 2012 May;11(5):148-59. [PMID: 22505724]
 [3] hCKSAAP_UbSite: improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties.
 Chen Z, Zhou Y, Song J, Zhang Z.
 Biochim Biophys Acta. 2013 Aug;1834(8):1461-7. [PMID: 23603789]
 [4] Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass.
 Povlsen LK, Beli P, Wagner SA, Poulsen SL, Sylvestersen KB, Poulsen JW, Nielsen ML, Bekker-Jensen S, Mailand N, Choudhary C.
 Nat Cell Biol. 2012 Oct;14(10):1089-98. [PMID: 23000965]
 [5] Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
 Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW.
 Nature. 2013 Apr 18;496(7445):372-6. [PMID: 23503661
Functional Description
 Involved in the apoptotic response after nerve growth factor (NGF) binding in neuronal cells. Binds NGFR/p75NTR and antagonizes its association with NTRK1/TrkA, inhibits cell cycle progression, and facilitates NGFR-mediated apoptosis. May act as a regulator of the function of DLX family members. May regulate TP53/p53 transcriptional activity and inhibit cell proliferation. Enhances TP53 phosphorylation and accumulation. May enhance ubiquitin ligase activity of RING-type zinc finger-containing E3 ubiquitin-protein ligases. Proposed to act through recruitment and/or stabilization of the Ubl-conjugating enzyme (E2) at the E3:substrate complex. 
Sequence Annotation
 REPEAT 296 301 1.
 REPEAT 302 307 2.
 REPEAT 308 313 3.
 REPEAT 332 337 4.
 REPEAT 338 343 5.
 REPEAT 344 349 6.
 REPEAT 350 355 7.
 REPEAT 356 361 8.
 REPEAT 362 367 9.
 REPEAT 368 373 10.
 REPEAT 374 379 11.
 REPEAT 380 385 12.
 REPEAT 386 391 13.
 REPEAT 392 397 14.
 REPEAT 398 403 15.
 REPEAT 404 409 16.
 REPEAT 410 415 17.
 REPEAT 416 421 18.
 REPEAT 422 427 19.
 REPEAT 428 432 20; approximate.
 REPEAT 433 438 21.
 REPEAT 439 444 22.
 DOMAIN 471 669 MAGE.
 REGION 296 444 22 X 6 AA tandem repeats of W-[PQ]-X-P-X-
 MOD_RES 92 92 Phosphotyrosine.  
Keyword
 Alternative splicing; Cell membrane; Complete proteome; Cytoplasm; Membrane; Phosphoprotein; Polymorphism; Reference proteome; Repeat; Tumor antigen; Ubl conjugation pathway. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 778 AA 
Protein Sequence
MAQKMDCGAG LLGFQNPDAC RAVCHPLPQP PASTLPLSAF PTLCDPPYSQ LRDPPAVLSC 60
YCTPLGASPA PAEASVEDSA LLMQTLMEAI QISEAPPTNQ ATAAASPQSS QPPTANEMAD 120
IQVSAAAARP KSAFKVQNAT TKGPNGVYDF SQAHNAKDVP NTQPKAAFKS QNATPKGPNA 180
AYDFSQAATT GELAANKSEM AFKAQNATTK VGPNATYNFS QSLNANDLAN SRPKTPFKAW 240
NDTTKAPTAD TQTQNVNQAK MATSQADIET DPGISEPDGA TAQTSADGSQ AQNLESRTII 300
RGKRTRKINN LNVEENSSGD QRRAPLAAGT WRSAPVPVTT QNPPGAPPNV LWQTPLAWQN 360
PSGWQNQTAR QTPPARQSPP ARQTPPAWQN PVAWQNPVIW PNPVIWQNPV IWPNPIVWPG 420
PVVWPNPLAW QNPPGWQTPP GWQTPPGWQG PPDWQGPPDW PLPPDWPLPP DWPLPTDWPL 480
PPDWIPADWP IPPDWQNLRP SPNLRPSPNS RASQNPGAAQ PRDVALLQER ANKLVKYLML 540
KDYTKVPIKR SEMLRDIIRE YTDVYPEIIE RACFVLEKKF GIQLKEIDKE EHLYILISTP 600
ESLAGILGTT KDTPKLGLLL VILGVIFMNG NRASEAVLWE ALRKMGLRPG VRHPLLGDLR 660
KLLTYEFVKQ KYLDYRRVPN SNPPEYEFLW GLRSYHETSK MKVLRFIAEV QKRDPRDWTA 720
QFMEAADEAL DALDAAAAEA EARAEARTRM GIGDEAVSGP WSWDDIEFEL LTWDEEGDFG 780
DPWSRIPFTF WARYHQNARS RFPQTFAGPI IGPGGTASAN FAANFGAIGF FWVE 834 
Gene Ontology
 GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
 GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
 GO:0043234; C:protein complex; IDA:UniProtKB.
 GO:0003713; F:transcription coactivator activity; IEA:Compara.
 GO:0097190; P:apoptotic signaling pathway; TAS:Reactome.
 GO:0050680; P:negative regulation of epithelial cell proliferation; IDA:UniProtKB.
 GO:0045892; P:negative regulation of transcription, DNA-dependent; IEA:Compara.
 GO:0048011; P:neurotrophin TRK receptor signaling pathway; TAS:Reactome.
 GO:0043065; P:positive regulation of apoptotic process; IEA:Compara.
 GO:0090190; P:positive regulation of branching involved in ureteric bud morphogenesis; IEA:Compara.
 GO:0043406; P:positive regulation of MAP kinase activity; IEA:Compara.
 GO:0045893; P:positive regulation of transcription, DNA-dependent; IEA:Compara.
 GO:0042981; P:regulation of apoptotic process; TAS:UniProtKB.
 GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IEA:Compara.
 GO:0006355; P:regulation of transcription, DNA-dependent; TAS:UniProtKB. 
Interpro
 IPR002190; MAGE. 
Pfam
 PF01454; MAGE 
SMART
  
PROSITE
 PS50838; MAGE 
PRINTS